PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023530881.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family RAV
Protein Properties Length: 363aa    MW: 42215.5 Da    PI: 8.1063
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023530881.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.88.3e-115299255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    ++kGV    ++grW A+I+       + +r++lg+f ++++Aa a++ a+ kl+ 
  XP_023530881.1 52 KFKGVV-PQQNGRWGAQIYA------NhQRIWLGTFKSEKDAAMAYDSAAIKLRT 99
                    799996.6679******999......44**********99************996 PP
2B395.24.6e-30176266184
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                     f+k+ltpsdv+k++rlv+pkk+a +h        ++++ +++++++d+s ++W+++++y+++s+++v+t+GW++Fvk+++Lk++D+++F+ 
  XP_023530881.1 176 FQKELTPSDVGKLNRLVIPKKYAVKHfpyisesAEENNDDIEIVFYDTSMKTWKFRYCYWRSSQSFVFTRGWNRFVKEKKLKANDIITFYT 266
                     99****************************99855556899************************************************93 PP
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    
MEDEASSTFI SFTKSPLLID EVSDSNFSDY AIPDAKRMRL DHDLNDVATV EKFKGVVPQQ  60
NGRWGAQIYA NHQRIWLGTF KSEKDAAMAY DSAAIKLRTR DSHRNFPWTR LSIEEPNFQS  120
KFSIDAVLSM IKDGSYSSKF SAYLRTKSQI CDSNIQNLQT IENGDRDGHF SCSHLFQKEL  180
TPSDVGKLNR LVIPKKYAVK HFPYISESAE ENNDDIEIVF YDTSMKTWKF RYCYWRSSQS  240
FVFTRGWNRF VKEKKLKAND IITFYTYESC GRDKNGGTLI FIDVIYKKPE DDRSESSCLA  300
AERESIKNEQ LQRELGLDRE DCEGKKKKKK KEEEEEILKR EKLNPISQNV GQKRIRLFGV  360
HID
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325331KKKKKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-100RAV family protein