PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023529781.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 247aa MW: 27628.4 Da PI: 8.7598

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023529781.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.5	2.7e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ ++k +G g+W++ +r g+ R++k+c++rw +yl XP_023529781.1 14 KGAWTKEEDDRLIAYIKAHGEGCWRSLPRAAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	55.1	1.7e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+ Ede +++++ +lG++ W++Ia +++ gRt++++k++w+++ XP_023529781.1 67 RGNFTEHEDEVIIKLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence
MGRSPCCEKA HTNKGAWTKE EDDRLIAYIK AHGEGCWRSL PRAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TEHEDEVIIK LHSLLGNRWS LIAGRLPGRT DNEIKNYWNT HIKRKLLSRG 120 IDPTTHRAII DPSPATTISF TSNSAVEDQE DRKKQVIDSS PTENRHLLDL NLDLKISPPY 180 PVAAGAAMKN EGRNSLCFSC SLGFENSKDC SCGNGKNNII ASSDNSKGFD FLGLKSCVLD 240 CRTLEIK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	1e-105	MYB family protein