PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023529440.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

TCP

Protein Properties

Length: 378aa MW: 40388.4 Da PI: 7.6549

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023529440.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	130.5	1.6e-40	76	193	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+p+++++tgt++++a+++ + s +ss+s+ s + XP_023529440.1 76 PPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTsLNISLRSSGSTMSVPsqlrsss 170 789******************************************************************99988888888888666665555555 PP TCP 89 ......................k 89 + XP_023529440.1 171 yynpnfslhpprrtlfpgfglsS 193 55566666666555555555532 PP

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence
MEGGDDLHRY HHHHHHHQHH HRPNFPFQLL EKKDDDDASA ASCSTSPYPS LAISTDPTTT 60 AAAAAAAAVE PSKKPPPKRT STKDRHTKVD GRGRRIRMPA LCAARVFQLT RELGHKSDGE 120 TIEWLLQQAE PSVIAATGTG TIPANFTSLN ISLRSSGSTM SVPSQLRSSS YYNPNFSLHP 180 PRRTLFPGFG LSSETSSTAL LNFQSTNTGN SLLQAKPELR DTTTSLDLSD AAEDISIGRK 240 RRPSPEQEFS TGAIPASGGQ VPANLWMLAN TNNQGMGVDP IWTFPSVNNS GLYRGTMSSG 300 LHFMNFPGPV TLVPGQQLGS SASGGNNSSS EAHFNILAGL NPYRSVSSSG VMEAQGSGSQ 360 SHHGGGGDDR HDTTSHHS

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence

MEGGDDLHRY HHHHHHHQHH HRPNFPFQLL EKKDDDDASA ASCSTSPYPS LAISTDPTTT  60
AAAAAAAAVE PSKKPPPKRT STKDRHTKVD GRGRRIRMPA LCAARVFQLT RELGHKSDGE  120
TIEWLLQQAE PSVIAATGTG TIPANFTSLN ISLRSSGSTM SVPSQLRSSS YYNPNFSLHP  180
PRRTLFPGFG LSSETSSTAL LNFQSTNTGN SLLQAKPELR DTTTSLDLSD AAEDISIGRK  240
RRPSPEQEFS TGAIPASGGQ VPANLWMLAN TNNQGMGVDP IWTFPSVNNS GLYRGTMSSG  300
LHFMNFPGPV TLVPGQQLGS SASGGNNSSS EAHFNILAGL NPYRSVSSSG VMEAQGSGSQ  360
SHHGGGGDDR HDTTSHHS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47620.1	3e-54	TCP family protein