PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023529228.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 503aa MW: 56176 Da PI: 8.1798

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023529228.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.9	0.0014	411	433	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kCp+C+k F + L H r+H XP_023529228.1 411 HKCPICNKLFASGQALGGHKRSH 433 79*****************9999 PP

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence
MEANLAARHV CKLCNKSFAC GRSLGGHMRS HLTNNLADNN DEKHSRTSLQ LANYSAGSLS 60 YMEEDTDLEG GNLGYGLRKN PKKTQKLKFL GEEPSLLDKF CRQCGKGFQS WKSLFGHMKC 120 HSERALVSSS QELEEPDSYI TDAKQKVVMD IQSDNETEAP NKRKRSTRRR TAQMGTAANS 180 TSLSFATNSS SVSEIEQEQE VAISLMLLSM DVGNWVGFNS PAESSDNNSK FLEAPSVVES 240 KTSSVKQSEH SSSGFINKGK MMKKTQPDQR AGSKTFPKKN DQNQARFSSD TFLKSRKKTL 300 AEFWDSKICK KPKKRSKFEC NICYKIFHSY QALGGHRASH KKIKGCFVES PMEEEEEEEE 360 EEEMGSESSL EVAISADPTA ESKLWKGLNN GGRSEEEDEM GSQIPKKINK HKCPICNKLF 420 ASGQALGGHK RSHLINGSES SKNREPIEIP KQVPGIRGFL DLNLPPEPAE REPKDHNLAS 480 LNPWWVAPNE HKHEALLNVG FHI

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence

MEANLAARHV CKLCNKSFAC GRSLGGHMRS HLTNNLADNN DEKHSRTSLQ LANYSAGSLS  60
YMEEDTDLEG GNLGYGLRKN PKKTQKLKFL GEEPSLLDKF CRQCGKGFQS WKSLFGHMKC  120
HSERALVSSS QELEEPDSYI TDAKQKVVMD IQSDNETEAP NKRKRSTRRR TAQMGTAANS  180
TSLSFATNSS SVSEIEQEQE VAISLMLLSM DVGNWVGFNS PAESSDNNSK FLEAPSVVES  240
KTSSVKQSEH SSSGFINKGK MMKKTQPDQR AGSKTFPKKN DQNQARFSSD TFLKSRKKTL  300
AEFWDSKICK KPKKRSKFEC NICYKIFHSY QALGGHRASH KKIKGCFVES PMEEEEEEEE  360
EEEMGSESSL EVAISADPTA ESKLWKGLNN GGRSEEEDEM GSQIPKKINK HKCPICNKLF  420
ASGQALGGHK RSHLINGSES SKNREPIEIP KQVPGIRGFL DLNLPPEPAE REPKDHNLAS  480
LNPWWVAPNE HKHEALLNVG FHI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	310	344	KKPKKRSKFECNICYKIFHSYQALGGHRASHKKIK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	2e-28	C2H2 family protein