PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023528501.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GATA
Protein Properties Length: 345aa    MW: 37558 Da    PI: 5.2468
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023528501.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA565.3e-18252286135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  XP_023528501.1 252 CQHCAAEKTPQWRTGPMGPKTLCNACGVRYKSGRL 286
                     *******************************9885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    
MPKTFHICVY TPPLPSQKPP FPLLSGNSNY SLVTCSVFME VPEYLVGGYY GTEGGQFSPD  60
NQKSAAEQFA VDEYLLDFSN EDVAMHSGCF DNVAGNCCDS SMVTAIESCN SSASSGDNLV  120
LGNFGSGGYC EAQFSDELCI PCDDLAELEW LSNFVEGSFS TEEIEKDFQA IPFLSGGIGT  180
AVTLEAPSSS GETAFGYGSG KTTSFFHGEA LTLPCKARSK RSRGSPCDWS TRVLRATAPE  240
AGKSEMTSGR KCQHCAAEKT PQWRTGPMGP KTLCNACGVR YKSGRLVPEY RPAASPTFLS  300
TKHSNSHRKV MELRRQNEVE QLGRWKGVEE YLIHRINGGD FSRMM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.12e-63GATA family protein