PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023527045.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C3H

Protein Properties

Length: 727aa MW: 79948.7 Da PI: 6.865

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023527045.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21	5.8e-07	302	322	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg XP_023527045.1 302 PCPDFRK-GACRHGDMCEYAHG 322 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 727 aa Download sequence
MCGGPEKSNS ASTTSARLPN PKDMNHLTVD CEDSFYSLLE LASDNDAEGF KSMMESDLFS 60 LNKSGLWYVR QKGSKQVVNE HRTPLMVAAT YGCVDVLKLI LSYPEVDVNL SSGTDKSTAL 120 HCATSSGSVN AVDIVDLLLS AGADPKTKDV NGDRPVDVIF VHPKLQKQNT RFRLEELLNN 180 HSSGSLDVSC LHLSIKTPDS ESPPLSSSLE DEFRSTPKSI SSPKFTDGFA NSTKEKKEYP 240 IDPSLPDIKN SIYATDEFRM FSFKVRPCSR AYSHDWTECP FVHPGENARR RDPRKFHYSC 300 VPCPDFRKGA CRHGDMCEYA HGVFECWLHP AQYRTRLCKD GTSCNRRVCF FAHTNEELRP 360 LYVSTGSAVP SPRSIGSAPT VMDMATALGL LPGSPSSVSA LSPSPFTQTM SPSSNGVCHS 420 SVNWQQPNVP TLHLPGSNLQ SSRLRSSLNA RDMPLEDLNV LPDFNSHSQP RILNDLNCFS 480 QPCPTPVSVS RSGWTQTLSP NNLEELFSSE ISSSPRFSDP AANVFSPTRK STMLNQFQQQ 540 QQNMLSPINT SIMSPKNVDH HLLQASYGVS SPGRMSPRNT EPHSPMGSRF SAFVQREKHN 600 LRTLSSWELG SNVPSSLIGS PINSLPKWGS PNGKVDWSVG KNELGQQMRR SSSFEMGNNG 660 EEPDLSWVQT LVKESPPEML KEKLAVPGRG GAASGEGLTT TKPQLESTDH SVIGAWLEQM 720 QLDQLVV

Sequence ? help Back to Top

Protein Sequence Length: 727 aa Download sequence

MCGGPEKSNS ASTTSARLPN PKDMNHLTVD CEDSFYSLLE LASDNDAEGF KSMMESDLFS  60
LNKSGLWYVR QKGSKQVVNE HRTPLMVAAT YGCVDVLKLI LSYPEVDVNL SSGTDKSTAL  120
HCATSSGSVN AVDIVDLLLS AGADPKTKDV NGDRPVDVIF VHPKLQKQNT RFRLEELLNN  180
HSSGSLDVSC LHLSIKTPDS ESPPLSSSLE DEFRSTPKSI SSPKFTDGFA NSTKEKKEYP  240
IDPSLPDIKN SIYATDEFRM FSFKVRPCSR AYSHDWTECP FVHPGENARR RDPRKFHYSC  300
VPCPDFRKGA CRHGDMCEYA HGVFECWLHP AQYRTRLCKD GTSCNRRVCF FAHTNEELRP  360
LYVSTGSAVP SPRSIGSAPT VMDMATALGL LPGSPSSVSA LSPSPFTQTM SPSSNGVCHS  420
SVNWQQPNVP TLHLPGSNLQ SSRLRSSLNA RDMPLEDLNV LPDFNSHSQP RILNDLNCFS  480
QPCPTPVSVS RSGWTQTLSP NNLEELFSSE ISSSPRFSDP AANVFSPTRK STMLNQFQQQ  540
QQNMLSPINT SIMSPKNVDH HLLQASYGVS SPGRMSPRNT EPHSPMGSRF SAFVQREKHN  600
LRTLSSWELG SNVPSSLIGS PINSLPKWGS PNGKVDWSVG KNELGQQMRR SSSFEMGNNG  660
EEPDLSWVQT LVKESPPEML KEKLAVPGRG GAASGEGLTT TKPQLESTDH SVIGAWLEQM  720
QLDQLVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein