PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023526169.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

M-type_MADS

Protein Properties

Length: 417aa MW: 46967.9 Da PI: 3.865

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023526169.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	61.2	1.2e-19	10	56	2	50
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 i+n r +tf kR++ ++KKA+ELS+LCd++ +v+i+s ++++++ XP_023526169.1 10 LISNPKSRRTTFQKRKKSLMKKAYELSTLCDVQTCVVIASD--EFQTWP 56 699***********************************995..678887 PP

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence
MGRGTLSLKL ISNPKSRRTT FQKRKKSLMK KAYELSTLCD VQTCVVIASD EFQTWPSDRN 60 QVEAMIRSYK SQSFCKHSAK SSYDLNQFFS DRKNKIVTET SKLRDKVQKS KDTNSDHCLD 120 SLSEHQLKVL LATLDSKIGV ADSMIEFMEA DYDYLIEGAV EISSIDKQTL SPLETEASPK 180 LNISELDMEA NYDHLIGGDT EILSVDTQTF SPFETELSTE FDVSEMFMES NYDPLIEGDA 240 EIVSIDTQTF SPFETELSTE FDVSEMFMES NYDNLIEGAA EIVSNDTQTF SPFETEASPE 300 FDVSEMLMEA NYDPLIEGAA EIVSIDTQTS SPLETESSPE LNLSEIFMEA IHDDLIEEPT 360 EIPTLNSLET EVFSELDISE LLAGSGEFEF NVEGFQSLLE DEDHQTLAEN HSFIFQS

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence

MGRGTLSLKL ISNPKSRRTT FQKRKKSLMK KAYELSTLCD VQTCVVIASD EFQTWPSDRN  60
QVEAMIRSYK SQSFCKHSAK SSYDLNQFFS DRKNKIVTET SKLRDKVQKS KDTNSDHCLD  120
SLSEHQLKVL LATLDSKIGV ADSMIEFMEA DYDYLIEGAV EISSIDKQTL SPLETEASPK  180
LNISELDMEA NYDHLIGGDT EILSVDTQTF SPFETELSTE FDVSEMFMES NYDPLIEGDA  240
EIVSIDTQTF SPFETELSTE FDVSEMFMES NYDNLIEGAA EIVSNDTQTF SPFETEASPE  300
FDVSEMLMEA NYDPLIEGAA EIVSIDTQTS SPLETESSPE LNLSEIFMEA IHDDLIEEPT  360
EIPTLNSLET EVFSELDISE LLAGSGEFEF NVEGFQSLLE DEDHQTLAEN HSFIFQS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58890.1	2e-17	M-type_MADS family protein