PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023525508.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

WRKY

Protein Properties

Length: 299aa MW: 32628.7 Da PI: 8.2792

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023525508.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106.3	1.6e-33	135	192	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt a+C+vkk+vers dp+vv++tYeg+H+h+ XP_023525508.1 135 EDGYRWRKYGQKAVKNSPFPRSYYRCTNASCNVKKRVERSFVDPTVVVTTYEGQHTHP 192 8********************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence
MEKKKEEIMN SGGGSGGGGG GGGGYLPFSD SMTGGSLFDF CDGEKLSVGF MELLGVKNGE 60 FKDYCSEVVN PPDTPNSSSI SSPSTDAADH DADGENPQQQ HKPCNNPLKV KRRKQKREKG 120 QRFAFMTKSE VDHLEDGYRW RKYGQKAVKN SPFPRSYYRC TNASCNVKKR VERSFVDPTV 180 VVTTYEGQHT HPSPILTRSA LAIATPPPPS MLGGGCVGVA PIPWLKASND THAISHQYIQ 240 NSTFYPPQHS TVDYNRSLIG AANMAGLLQD KRLCNPNPAF LADHGLLQDV VPPHMLKQE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	119	RRKQKREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47260.1	9e-52	WRKY family protein