PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023525234.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GRAS
Protein Properties Length: 547aa    MW: 59231.2 Da    PI: 4.5172
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023525234.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS401.86.8e-1231775361373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv++Ll+cAeav+ ++l+la++lL++++ l+  +g +m+++a yf++AL +++++        l+p++  e+ ss +   +  f+  +P++kf+h
  XP_023525234.1 177 LVHTLLACAEAVDINNLNLADTLLKHIRILVEAQGGAMRKVAGYFAQALTHHIYG--------LHPQKPFEYASSYTDLLQMNFYVSCPYMKFAH 263
                     689****************************************************........55555554555555455556************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     +taNqaIle+v ++++vH++Df+++qGlQWpaL+qaLa Rp+gpp + +Tg+g+p  + s++ l+e+g +La+fA+++gv+fef+   +++l++l
  XP_023525234.1 264 FTANQAILESVGTATTVHVVDFSLQQGLQWPALIQALALRPGGPPAFYLTGIGPPPGEnSSDGLQEVGLKLAQFADTIGVEFEFRGYFCNDLAEL 358
                     ******************************************************88778************************************ PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     +++ L+++  E+++Vn+v++lhrll++++++e+    vL+ +k+l+Pk+v+vveq adhn++sF  rf+eal+yys+lfdsle +l  + ee++ 
  XP_023525234.1 359 DPSILNLE-SETVIVNSVFKLHRLLAHPGAIEK----VLRSIKELNPKIVTVVEQVADHNGPSFTGRFTEALHYYSSLFDSLEGSL--AGEEDVA 446
                     *****885.7***********************....************************************************8..5577788 PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                      ++e+lgr+i nvva eg++r+erhetl++W++rl+++GF+ v+l+++a kqa++ll+ ++ ++gyrvee++gsl+lgW++rpL+++SaW
  XP_023525234.1 447 GSEEYLGRQILNVVAGEGSDRVERHETLAQWQSRLGSSGFEMVHLGSNAFKQASTLLALFSgGNGYRVEENNGSLTLGWHTRPLIATSAW 536
                     88889************************************************************************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    
MKRDHSYQSP NPAAGKAKIW PEGEEDDDEL LAALGYNVRL SDMADVALKL EQLEMVMGLS  60
EEDGISHLSS NTVHYNPSDV SSWVQSMLAE LNTDDSVFAE AESTSAIAAF ADDSEYDLRA  120
IPGVAVFPQI DSNTPRKRFK KSESESVLVT AASSSSSSSE PSRTVVLADS TDTGVYLVHT  180
LLACAEAVDI NNLNLADTLL KHIRILVEAQ GGAMRKVAGY FAQALTHHIY GLHPQKPFEY  240
ASSYTDLLQM NFYVSCPYMK FAHFTANQAI LESVGTATTV HVVDFSLQQG LQWPALIQAL  300
ALRPGGPPAF YLTGIGPPPG ENSSDGLQEV GLKLAQFADT IGVEFEFRGY FCNDLAELDP  360
SILNLESETV IVNSVFKLHR LLAHPGAIEK VLRSIKELNP KIVTVVEQVA DHNGPSFTGR  420
FTEALHYYSS LFDSLEGSLA GEEDVAGSEE YLGRQILNVV AGEGSDRVER HETLAQWQSR  480
LGSSGFEMVH LGSNAFKQAS TLLALFSGGN GYRVEENNGS LTLGWHTRPL IATSAWAVAS  540
CTGGESS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.10.0GRAS family protein