PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023525121.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 276aa MW: 30731.6 Da PI: 8.7026

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023525121.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.5	6.5e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++lvd+++++G g+W+t ++ g+ R++k+c++rw +yl XP_023525121.1 14 KGAWTKDEDQRLVDYIRLHGEGCWRTLPKAAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	57.5	3e-18	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T eEd+l+v+++ +lG++ W+ Ia +++ gRt++++k++w+++ XP_023525121.1 67 RGNFTDEEDQLIVKLHSLLGNK-WSVIAGRLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence
MGRSPCCEKA HTNKGAWTKD EDQRLVDYIR LHGEGCWRTL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TDEEDQLIVK LHSLLGNKWS VIAGRLPGRT DNEIKNYWNT HIKRKLISRG 120 IDPQTHRPLN ESAAVSTRFG YLNHEYPNTN NNSSSSSSVP VAELPIMKPT IINAPSLDID 180 EEGSGTTTET EPAATHVKTE VNLELSIGLH PFQGETARGS PRSSAESRLR ERSPYQFGSL 240 CLCCQLGSDN GGECRRNCQN SKGWLFGVRP NALGSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09460.1	2e-91	MYB family protein