PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023524776.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

LBD

Protein Properties

Length: 276aa MW: 31433.1 Da PI: 4.5901

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023524776.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134.1	5.3e-42	10	108	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCa+Ck++rr+C+kdC+lapyfpa+qpk f+n+h+lFG++n++++lk++p+++++++m+s++ye+++r r PvyG++gv+++l+ q++q+++el+ XP_023524776.1 10 ACASCKYQRRRCSKDCPLAPYFPADQPKMFQNAHRLFGVRNIMNILKQVPPSQKDETMTSIIYESNMRSRFPVYGCCGVLWQLHYQIQQVSEELQ 104 7*********************************************************************************************9 PP DUF260 96 llke 99 ++k+ XP_023524776.1 105 QVKA 108 9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence
MTMKGGTTQA CASCKYQRRR CSKDCPLAPY FPADQPKMFQ NAHRLFGVRN IMNILKQVPP 60 SQKDETMTSI IYESNMRSRF PVYGCCGVLW QLHYQIQQVS EELQQVKARV SMMKDLGIAD 120 DNDVVFPVYT QQQQQQQQQQ QQQYDCLGVD GNDLLFGNVN NGGVYVDNDD HNNIGSMLKE 180 LRIQQHYNDN FGINVESMLM QSNLIPAVLQ HEMEISHDYD EIPFDTIADD RQSYVESQEA 240 CNSSAESTFK DVSEPSAEYL SRTDLKNAAA CFSLTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	7e-46	LBD family protein