PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023524631.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 393aa MW: 43681.7 Da PI: 6.5568

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023524631.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00081	32	52	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ C+ksFs+ L H+r+H XP_023524631.1 32 CKLCNKSFSNGKVLGGHMRSH 52 *******************99 PP
2	zf-C2H2	13.5	0.00021	100	120	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F ++ L H+r H XP_023524631.1 100 CKICGKGFDSSKALFGHMRHH 120 99*****************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence
MISASDSGCV TLNSSMELHL QDHQEQTKQH LCKLCNKSFS NGKVLGGHMR SHRSTQNPPK 60 KRKKNSITAS YSLRENPKKS WKFSAPIPQN PQTPSQENCC KICGKGFDSS KALFGHMRHH 120 SGRRKESVQK SKEKECNNKD LGNLKSLRCQ SPIAGGQSDG ETLGLLRRKR SRRTRCKLSN 180 PYCCAASPPC SSDLIEYSSS CVVDGIEPDV EELALCLLML SKGVDHYGGE FSSESMGGSH 240 FSGFKAKSPL KRETHLDLDL DLDLDSEEEE ERAKVGVFPE VGRYLKPLKK KCEIEGFYVK 300 VSEEEVNGES GKEGKHQCGV CLKVFGSGKA LGGHKRAHLL KPNSMDLEEE DDEDDEDDED 360 EEDDDEFKPW WNGDGDDHRN GGRQLVEGLA SSN

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence

MISASDSGCV TLNSSMELHL QDHQEQTKQH LCKLCNKSFS NGKVLGGHMR SHRSTQNPPK  60
KRKKNSITAS YSLRENPKKS WKFSAPIPQN PQTPSQENCC KICGKGFDSS KALFGHMRHH  120
SGRRKESVQK SKEKECNNKD LGNLKSLRCQ SPIAGGQSDG ETLGLLRRKR SRRTRCKLSN  180
PYCCAASPPC SSDLIEYSSS CVVDGIEPDV EELALCLLML SKGVDHYGGE FSSESMGGSH  240
FSGFKAKSPL KRETHLDLDL DLDLDSEEEE ERAKVGVFPE VGRYLKPLKK KCEIEGFYVK  300
VSEEEVNGES GKEGKHQCGV CLKVFGSGKA LGGHKRAHLL KPNSMDLEEE DDEDDEDDED  360
EEDDDEFKPW WNGDGDDHRN GGRQLVEGLA SSN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	60	64	KKRKK
2	60	82	KKRKKNSITASYSLRENPKKSWK
3	61	83	KKRKKNSITASYSLRENPKKSWK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	2e-14	C2H2 family protein