PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023524360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 237aa MW: 27574.8 Da PI: 5.3233 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60 | 3.8e-19 | 62 | 115 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++++++q+++Le++Fe ++++ e++ ++A++l+L+ rqV++WFqNrRa++k XP_023524360.1 62 RKRRLKPDQVKALERHFEVENKLEPERKMKIATELELEPRQVTIWFQNRRARWK 115 445899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 123.2 | 1.2e-39 | 61 | 153 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 e+krrl+ +qvk+LE++Fe e+kLeperK+++a+eL+l+prqv +WFqnrRAR+ktkqlE+dy +Lk++ydalk + + Leke+++L+++++e XP_023524360.1 61 ERKRRLKPDQVKALERHFEVENKLEPERKMKIATELELEPRQVTIWFQNRRARWKTKQLERDYGVLKANYDALKLDYDVLEKENASLASKVRE 153 69**************************************************************************************99986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence |
MMMRFDRSES LDSFSSIFTP KEQPSSTTIG GYSKEFQAML DSLEEEDNSE DGGGSSGSAP 60 ERKRRLKPDQ VKALERHFEV ENKLEPERKM KIATELELEP RQVTIWFQNR RARWKTKQLE 120 RDYGVLKANY DALKLDYDVL EKENASLASK VRELREKVSR EGTKMKIQRE LKDEKNSFVS 180 TNNNSSLNSM LNSFELSRKV YENQTQFTKA MNEDQSLFNT EEPCNFCSVD QAPSLHW |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 61 | 66 | ERKRRL |
2 | 62 | 91 | RKRRLKPDQVKALERHFEVENKLEPERKMK |
3 | 110 | 118 | RRARWKTKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65310.2 | 2e-45 | HD-ZIP family protein |