PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023522554.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

WOX

Protein Properties

Length: 361aa MW: 40488.9 Da PI: 7.1174

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023522554.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.3	8.4e-21	227	286	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l+ + r+p+a+++e+++++l +++ ++V++WFqN++a+e++ XP_023522554.1 227 TRWNPTQEQIGILEMLYSRgMRTPNAQQIEHITAQLgnygKIEGKNVFYWFQNHKARERQ 286 7***************99************************************97 PP
2	Wus_type_Homeobox	115.3	2.9e-37	227	288	4	65
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+ly++G+rtPn+++i++ita+L +yGkie+kNVfyWFQN+kaRerqkq XP_023522554.1 227 TRWNPTQEQIGILEMLYSRGMRTPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQ 288 8***********************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MAFNSTSLIG FAQSVFSYNS NIMLAALISL LLVVLFVLLL HAYANCFFPQ PRHRRTSVTV 60 SYVLGPPRLS RFDSVPFDSG AAPSKGLDPS VISAIPLFVY ESEEKKCAAV MECVICLSEF 120 EERELGRRLP KCSHGFHLEC IDMWLNSHAS CPVCRAPVLG DATDCSDAVE SGRLSGEREI 180 GGEIVTEERR NCEIQRNEGQ NGQFHSDSSS SSSSSPQTAV ETHPGGTRWN PTQEQIGILE 240 MLYSRGMRTP NAQQIEHITA QLGNYGKIEG KNVFYWFQNH KARERQKQKR NSLGLPHSPR 300 TPPPPILPTF HPSFPGEEDS PYKKKCLYWG FECFVQHNGI LCKKEDGDRT LDLFPLHPER 360 R

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MAFNSTSLIG FAQSVFSYNS NIMLAALISL LLVVLFVLLL HAYANCFFPQ PRHRRTSVTV  60
SYVLGPPRLS RFDSVPFDSG AAPSKGLDPS VISAIPLFVY ESEEKKCAAV MECVICLSEF  120
EERELGRRLP KCSHGFHLEC IDMWLNSHAS CPVCRAPVLG DATDCSDAVE SGRLSGEREI  180
GGEIVTEERR NCEIQRNEGQ NGQFHSDSSS SSSSSPQTAV ETHPGGTRWN PTQEQIGILE  240
MLYSRGMRTP NAQQIEHITA QLGNYGKIEG KNVFYWFQNH KARERQKQKR NSLGLPHSPR  300
TPPPPILPTF HPSFPGEEDS PYKKKCLYWG FECFVQHNGI LCKKEDGDRT LDLFPLHPER  360
R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46480.1	1e-47	WOX family protein