PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023520684.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

WRKY

Protein Properties

Length: 697aa MW: 76542.8 Da PI: 5.2747

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023520684.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104	8.2e-33	228	285	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK+vkgse+prsYY+Ct+++C vkkkvers d++++ei+Y+g Hnh+k XP_023520684.1 228 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCIVKKKVERSL-DGQITEIIYTGAHNHSK 285 7**************************************.*************85 PP
2	WRKY	102.7	2e-32	444	500	2	58
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 +Dgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++d k+v++tYeg+Hnh XP_023520684.1 444 EDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCSVRKHVERASHDLKCVITTYEGKHNH 500 8******************************************************** PP

Sequence ? help Back to Top
Protein Sequence Length: 697 aa Download sequence
MTGYRTSRQI MFMEVYGEHR ASKFGDDDVL VDVNGGSLAD RRASKRGRNG FNIAMARCPL 60 GSSMVRSPFL TIPSGFSPTV LLDSPIMLLN THDIPSPTTG TFPIHSIKDE NSLLNPIMLE 120 DGSSYGSEDS YYRFTPRGEL RLGNQEGETD HQTLMDYELL ADFPKEGCSV LEQYELGSSS 180 TDKNNVETCL SSVTHNQDIE QAAPPPPPPL ETEHKGSYVP VGMLKTSEDG YNWRKYGQKQ 240 VKGSEYPRSY YKCTHPNCIV KKKVERSLDG QITEIIYTGA HNHSKPDPTR RALLGSVLSQ 300 DDAPDTGEGG GSRAKLEGGL AWRNSHYGVK DWSVDGLERT SSVSAVTELS EPLYGKTVGG 360 FESIETPELS STLASHDDDD GGGGGGGNDD DELTNQGSIS ADDAEPELKR RRKEGISMET 420 SLGSRSVREQ RVVVQIETEF DILEDGYRWR KYGQKVVKGN PNPRSYYKCT SAGCSVRKHV 480 ERASHDLKCV ITTYEGKHNH LVPAARNSSS SSSSSSSTAQ ASSAAAAATQ AAAAPTRKSE 540 TQIQDLSTQF YPTPEFSSHE YQRSFGTAPP FCQLKFPPLQ TAFPALDFPI SLPLSQNLSA 600 FQVFLAERFL TPKQEHEEDN IYASFQAMTD TSSGSSSSSV SSVYQQTIKV MKKNGRWEVV 660 KSVLRCLIWS ILVVTTSGEE EVRPEFFISS VLDESEA

Sequence ? help Back to Top

Protein Sequence Length: 697 aa Download sequence

MTGYRTSRQI MFMEVYGEHR ASKFGDDDVL VDVNGGSLAD RRASKRGRNG FNIAMARCPL  60
GSSMVRSPFL TIPSGFSPTV LLDSPIMLLN THDIPSPTTG TFPIHSIKDE NSLLNPIMLE  120
DGSSYGSEDS YYRFTPRGEL RLGNQEGETD HQTLMDYELL ADFPKEGCSV LEQYELGSSS  180
TDKNNVETCL SSVTHNQDIE QAAPPPPPPL ETEHKGSYVP VGMLKTSEDG YNWRKYGQKQ  240
VKGSEYPRSY YKCTHPNCIV KKKVERSLDG QITEIIYTGA HNHSKPDPTR RALLGSVLSQ  300
DDAPDTGEGG GSRAKLEGGL AWRNSHYGVK DWSVDGLERT SSVSAVTELS EPLYGKTVGG  360
FESIETPELS STLASHDDDD GGGGGGGNDD DELTNQGSIS ADDAEPELKR RRKEGISMET  420
SLGSRSVREQ RVVVQIETEF DILEDGYRWR KYGQKVVKGN PNPRSYYKCT SAGCSVRKHV  480
ERASHDLKCV ITTYEGKHNH LVPAARNSSS SSSSSSSTAQ ASSAAAAATQ AAAAPTRKSE  540
TQIQDLSTQF YPTPEFSSHE YQRSFGTAPP FCQLKFPPLQ TAFPALDFPI SLPLSQNLSA  600
FQVFLAERFL TPKQEHEEDN IYASFQAMTD TSSGSSSSSV SSVYQQTIKV MKKNGRWEVV  660
KSVLRCLIWS ILVVTTSGEE EVRPEFFISS VLDESEA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56270.1	4e-81	WRKY family protein