PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023519659.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB_related
Protein Properties Length: 682aa    MW: 75801.2 Da    PI: 9.3255
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023519659.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.33.1e-07574623147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
   XP_023519659.1 574 RRPFSVAEVEVLVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 623
                      6789999*******************9988889**************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    
MVLQKRLDYG FHGYQVPTMP RATRSVRKRS LCRKGTEGSQ MRAFDLLATV ADKLLHGTDG  60
PTTTTTDTST EKDRYAVMNK ELDANSLLKV EPSDRGSCDQ GFVSELVLSG HEKKCDLNGC  120
LPQHDEDSPP QLVSVITNFD KSKEMGNLAS GVHVGSPRSK ESDNCELDGK SKVIVKYELH  180
KTEEVLTGTQ DQYDSCKRED PVIWDQKAHV LGNSNGCGEM TQDKQMIQNS SFATQNNVKL  240
VDRDDDENSS GCTHPVSSIK SFRTVPSSRD RRIKKVSASK SWKVVPRCRD ESLSKTDGIW  300
KSMFRSKSSH DSCRRQKSQM NIPFKKRKFF DCSSSVSNSD GGINSEGLSD STGKVFNSDT  360
SGRSCSASGH GHHKSFPSKD SHVKIRIKSF RVPELFIEIS ETATVGSLKR TVMEAVTAVL  420
GGGIRVGVLL QGKKVRDDNK TLFQTGISHD NQLDSLGFAL EPNPSRTPLA LCQEDSPCIL  480
PCDAPEPLTR YSPDASADHP GSSNVLPEPH RDSLGHFIES DHDSAPSPTN TSNHKSTTDS  540
KALVNVPAMT VEALTVVPMH RKSKRSEVAQ RRIRRPFSVA EVEVLVQAVE KLGTGRWRDV  600
KLRAFDNAKH RTYVDLKDKW KTLVHTARIS PQQRRGEPVP QELLDRVLSA HAYWSKQQAK  660
YQLKRQPETT TPMNKKTQQS WG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-110MYB_related family protein