PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023519654.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

WOX

Protein Properties

Length: 343aa MW: 38374.7 Da PI: 6.9155

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023519654.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	69.1	5.4e-22	79	138	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql++Leel+++ +r+psa+++++++++l +++ ++V++WFqN++a+e++ XP_023519654.1 79 SRWNPTPEQLRVLEELYRRgTRTPSADQIQHITAQLrrygKIEGKNVFYWFQNHKARERQ 138 7***************99************************************97 PP
2	Wus_type_Homeobox	118.2	3.6e-38	78	140	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RW+PtpeQ+++Leely++G+rtP++++iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+ XP_023519654.1 78 SSRWNPTPEQLRVLEELYRRGTRTPSADQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKR 140 79***********************************************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence
MWMMGYNDAG DLSDSFTPRR LRPLLPRPLS SLSSTAPVNP PFNLIHTNDF FSQFHHMATV 60 TDQTKRELNN APPPVVVSSR WNPTPEQLRV LEELYRRGTR TPSADQIQHI TAQLRRYGKI 120 EGKNVFYWFQ NHKARERQKR RRQMESAITA DHSTREAGIL ERKDSGSGRT VYEEQTKNWA 180 PSSNCTTLPE ESATIQPPPT PCTTQHGWVQ FQDFLRNNNN NTNNNNAPSS SSLHFMHSPP 240 TTALDGGGAQ LMMNTALIPT TTAAASTVTT IMHSKSHSNI GGFAPNGVEE LEESEEAETL 300 QLFPLCSESR NGEISEGKNG FETVGSSANM TPLQFFEFLP LKN

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence

MWMMGYNDAG DLSDSFTPRR LRPLLPRPLS SLSSTAPVNP PFNLIHTNDF FSQFHHMATV  60
TDQTKRELNN APPPVVVSSR WNPTPEQLRV LEELYRRGTR TPSADQIQHI TAQLRRYGKI  120
EGKNVFYWFQ NHKARERQKR RRQMESAITA DHSTREAGIL ERKDSGSGRT VYEEQTKNWA  180
PSSNCTTLPE ESATIQPPPT PCTTQHGWVQ FQDFLRNNNN NTNNNNAPSS SSLHFMHSPP  240
TTALDGGGAQ LMMNTALIPT TTAAASTVTT IMHSKSHSNI GGFAPNGVEE LEESEEAETL  300
QLFPLCSESR NGEISEGKNG FETVGSSANM TPLQFFEFLP LKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18010.1	9e-52	WOX family protein