PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023519512.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB_related

Protein Properties

Length: 482aa MW: 53069.5 Da PI: 8.587

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023519512.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.8	4.5e-17	60	104	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a k++G g W+ I +++g ++t+ q++s+ qk+ XP_023519512.1 60 REKWTEEEHQRFLEALKLYGRG-WRQIKEHVG-TKTAVQIRSHAQKF 104 789*****************.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence
MGVQEKNEGT LSNGSIAAAN NFLPKDGAQL DPLMRVSSIS SNSNENALKV RKPYTISKQR 60 EKWTEEEHQR FLEALKLYGR GWRQIKEHVG TKTAVQIRSH AQKFFSKVVR ESSGSNESSI 120 NPIEIPPPRP KRKPVHPYPR KAVDSIKAIS VAREPKRSPS PNLSAAEKET QSPTSVLTAF 180 SSDDQISAVS EQHNRCPSPI SQTVDMQSAR ISSVRKGELY LSSKSNGGEE KGMLSLESSS 240 ERFSEDSLTM KFKPGSVYKK VDNKLHSPVR SIKLFGRTVM VTGDKQPPGH DFEVTKSLAF 300 DGDSKNTCEA YAEKPVLLPS KHVDVNLALG MDNNGDWNMS PGGAPTNTLG NQDKSVPYVK 360 AMPNAPQTCW SLCQNVPYFY LAPSDQTSTG TCTDHVMEER IQDDNSLESS CADSCSGSPS 420 KNENENQSPE VKCQEPCLVG RGNANESKKG FVPYKRCLAQ RDTISALIVS EEREGRRARV 480 CL

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence

MGVQEKNEGT LSNGSIAAAN NFLPKDGAQL DPLMRVSSIS SNSNENALKV RKPYTISKQR  60
EKWTEEEHQR FLEALKLYGR GWRQIKEHVG TKTAVQIRSH AQKFFSKVVR ESSGSNESSI  120
NPIEIPPPRP KRKPVHPYPR KAVDSIKAIS VAREPKRSPS PNLSAAEKET QSPTSVLTAF  180
SSDDQISAVS EQHNRCPSPI SQTVDMQSAR ISSVRKGELY LSSKSNGGEE KGMLSLESSS  240
ERFSEDSLTM KFKPGSVYKK VDNKLHSPVR SIKLFGRTVM VTGDKQPPGH DFEVTKSLAF  300
DGDSKNTCEA YAEKPVLLPS KHVDVNLALG MDNNGDWNMS PGGAPTNTLG NQDKSVPYVK  360
AMPNAPQTCW SLCQNVPYFY LAPSDQTSTG TCTDHVMEER IQDDNSLESS CADSCSGSPS  420
KNENENQSPE VKCQEPCLVG RGNANESKKG FVPYKRCLAQ RDTISALIVS EEREGRRARV  480
CL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18330.1	5e-52	MYB_related family protein