PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023519502.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 1516aa MW: 169736 Da PI: 8.5982

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023519502.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00022	1425	1448	2	23
EET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirtH 23 +Cp Cgk F ++ +L++H r+H XP_023519502.1 1425 VCPvkGCGKKFFSHKYLVQHRRVH 1448 69999*****************99 PP
2	zf-C2H2	11.8	0.00074	1484	1510	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C Cg++F+ s++ rH r+ H XP_023519502.1 1484 YVCAepGCGQTFRFVSDFSRHKRKtgH 1510 899999****************99666 PP

Sequence ? help Back to Top
Protein Sequence Length: 1516 aa Download sequence
MAATALAAEP PQEVFSWLKT LPLAPEYHPT LAEFQDPISY IFKIEKEASK FGICKIVPPV 60 SPSPKKTVIV NFNRSLAARA PCSDTSDSKS PPTFTTRQQQ IGFCPRKTRP VQKSVWQSGE 120 YYTFQQFEAK AKSFEKSYLK KCAKKGGLSP LEIETLYWRA TLDKPFSVEY ANDMPGSAFV 180 PVNAKMLREA GEGTTLGETA WNMRGVSRAK GSLLKFMKEE IPGVTSPMVY VAMMFSWFAW 240 HVEDHDLHSL NYLHMGAGKT WYGVPRDAAV AFEEVVRVQG YGGEINPLVT FAVLGEKITV 300 MSPEVLVSAG VPCCRLVQNA GEFVVTFPRA YHTGFSHGFN CGEAANIATP EWVRLAKDAA 360 IRRASINYPP MVSHFQLLYD LALSSRSPLC TGAEPRSSRL KNKRKSEGEA VIKELFVQNI 420 IENNSLLDIL GRGASVVLLP PGSSDSIYSR LRIGSHLRAK SRFPVGFCSS KEETKSSQSF 480 DYDNLTLENS QGMNQVKGFY SANRLYSTLS ERNTENLCDS RSKTSNGSNE QGGNVLSDGL 540 SDQRLFSCVT CGILSFACVA IVQPREQAAR YLMSADCSFF NDWAVGSGIA IRDGHAVSSQ 600 QISNSGKRDT CVSDGLYDVP VQAVNRQLPI ADESYKANLS TEKRNETSAL GMLALAYGLS 660 SDSEEDNAEA DAALNPGDAK LTVCSSGNQY QYDNSGLTSS ENCKNTATLD HNASSFGVNA 720 TDQMHFQIND YEEFGQARCS SESEMDGIGS TKKNGLSPRY QDLHVNDRSS LDADTEKPTF 780 GESTEPVEIE NMPFAPDIDE DSSRLHVFCL EHAKEVEQQL RPIGGAHILL LCHPDYPKME 840 AEAKLVAQEL SVDHVWTDTT FRGATEDEER RIQLALDSEE AIPGNGDWAV KLGINLFYSA 900 NLSHSPLYSK QMPYNSVIYN AFGRSATPNA SGKPKVYQRR TAGKLKRIVA GKWCGKVWMS 960 NQVHSLLAKR DPQQEDVDVF HSWTMPDEKF DRKSENVRKT ETVMVNRKSA GKRKMTRGSG 1020 TAKKVKPRES EDMVSDDSVE DCVDQHHKIH RNKRYKFVEI NDAMSDDSVE DDSCGKHGGV 1080 SISKGVTYCR TYDTGSEDSL RDRRNQQHRG FSGFKLPKWG EIEPAVSDDS LEHDSSRHRE 1140 QHIRIPRSKQ TNVLKKNVVS HDIRDDSFLW HHQRTSRSKK AKSIESEDVV SEDSVENDSH 1200 QNRSRPQRKP AKPTAREDVF SDYPDDPDED DNPLLQHRRN MQFNTSDNQL DDSINQYRRR 1260 VLRSKPVKAE TISQMKQEIL RSAKRGASQT LKEEFAQSLK CGGRHTSNLE TPQPRIQHAT 1320 NRHGKQAKRT CKSTDLESEN EQPGGPSTRL RKRTLKPTKL SETKLKDKKP ISKKKVKNSS 1380 SLKTPAGRRD SKAAGDEESE YLCDIEGCNM SFGSKQELVV HKRNVCPVKG CGKKFFSHKY 1440 LVQHRRVHMD DRPLKCPWKG CKMTFKWAWA RTEHIRVHTG ARPYVCAEPG CGQTFRFVSD 1500 FSRHKRKTGH STKKGR

Sequence ? help Back to Top

Protein Sequence Length: 1516 aa Download sequence

MAATALAAEP PQEVFSWLKT LPLAPEYHPT LAEFQDPISY IFKIEKEASK FGICKIVPPV  60
SPSPKKTVIV NFNRSLAARA PCSDTSDSKS PPTFTTRQQQ IGFCPRKTRP VQKSVWQSGE  120
YYTFQQFEAK AKSFEKSYLK KCAKKGGLSP LEIETLYWRA TLDKPFSVEY ANDMPGSAFV  180
PVNAKMLREA GEGTTLGETA WNMRGVSRAK GSLLKFMKEE IPGVTSPMVY VAMMFSWFAW  240
HVEDHDLHSL NYLHMGAGKT WYGVPRDAAV AFEEVVRVQG YGGEINPLVT FAVLGEKITV  300
MSPEVLVSAG VPCCRLVQNA GEFVVTFPRA YHTGFSHGFN CGEAANIATP EWVRLAKDAA  360
IRRASINYPP MVSHFQLLYD LALSSRSPLC TGAEPRSSRL KNKRKSEGEA VIKELFVQNI  420
IENNSLLDIL GRGASVVLLP PGSSDSIYSR LRIGSHLRAK SRFPVGFCSS KEETKSSQSF  480
DYDNLTLENS QGMNQVKGFY SANRLYSTLS ERNTENLCDS RSKTSNGSNE QGGNVLSDGL  540
SDQRLFSCVT CGILSFACVA IVQPREQAAR YLMSADCSFF NDWAVGSGIA IRDGHAVSSQ  600
QISNSGKRDT CVSDGLYDVP VQAVNRQLPI ADESYKANLS TEKRNETSAL GMLALAYGLS  660
SDSEEDNAEA DAALNPGDAK LTVCSSGNQY QYDNSGLTSS ENCKNTATLD HNASSFGVNA  720
TDQMHFQIND YEEFGQARCS SESEMDGIGS TKKNGLSPRY QDLHVNDRSS LDADTEKPTF  780
GESTEPVEIE NMPFAPDIDE DSSRLHVFCL EHAKEVEQQL RPIGGAHILL LCHPDYPKME  840
AEAKLVAQEL SVDHVWTDTT FRGATEDEER RIQLALDSEE AIPGNGDWAV KLGINLFYSA  900
NLSHSPLYSK QMPYNSVIYN AFGRSATPNA SGKPKVYQRR TAGKLKRIVA GKWCGKVWMS  960
NQVHSLLAKR DPQQEDVDVF HSWTMPDEKF DRKSENVRKT ETVMVNRKSA GKRKMTRGSG  1020
TAKKVKPRES EDMVSDDSVE DCVDQHHKIH RNKRYKFVEI NDAMSDDSVE DDSCGKHGGV  1080
SISKGVTYCR TYDTGSEDSL RDRRNQQHRG FSGFKLPKWG EIEPAVSDDS LEHDSSRHRE  1140
QHIRIPRSKQ TNVLKKNVVS HDIRDDSFLW HHQRTSRSKK AKSIESEDVV SEDSVENDSH  1200
QNRSRPQRKP AKPTAREDVF SDYPDDPDED DNPLLQHRRN MQFNTSDNQL DDSINQYRRR  1260
VLRSKPVKAE TISQMKQEIL RSAKRGASQT LKEEFAQSLK CGGRHTSNLE TPQPRIQHAT  1320
NRHGKQAKRT CKSTDLESEN EQPGGPSTRL RKRTLKPTKL SETKLKDKKP ISKKKVKNSS  1380
SLKTPAGRRD SKAAGDEESE YLCDIEGCNM SFGSKQELVV HKRNVCPVKG CGKKFFSHKY  1440
LVQHRRVHMD DRPLKCPWKG CKMTFKWAWA RTEHIRVHTG ARPYVCAEPG CGQTFRFVSD  1500
FSRHKRKTGH STKKGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	0.0	C2H2 family protein