PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023519365.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

GRAS

Protein Properties

Length: 561aa MW: 63239.1 Da PI: 7.2377

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023519365.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	267.2	5.6e-82	300	561	3	267
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 +lL++cA+a+s+ d++ a++lL+++++++sp+gd +qRla+yf+++L++rla ++ ly ++++ets +e l+a+++f +++P+ ++s++ XP_023519365.1 300 TLLTQCAQAISNYDQRTASELLNQIRQHSSPSGDGNQRLAHYFANGLETRLAA-GTPLYMPFASNETS---AAEILKAFQMFIKACPFRRMSYFY 390 69************************************************9.99999888888877...9******************* PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190 aN++I++ +e+e+++HiiDf+i +GlQWp+L+q L+ Rp+gpp++RiTg++ p++g +e++e+tg+rLa+++++++vpfe++v +a+++e+++ XP_023519365.1 391 ANRTIMKLAEKETTLHIIDFGILYGLQWPCLIQRLSRRPGGPPKVRITGIELPQPGfrPAERVEQTGRRLAHYCKRFNVPFEYKV-LAQKWETVK 484 ***************************************************9*************************.6**** PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267 +e+L+v+++E ++V + ++l++++de+v +s+rd+vLkl+++++P+++++ + + n++ F +rf eal +ys+l XP_023519365.1 485 YEDLNVNRDELTIVTCLFRLKNVPDETVVANSPRDRVLKLIRKINPDLFIHEVMNGSFNTPFFNTRFKEALFHYSSL 561 ************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 561 aa Download sequence
MDNILDDFPN SFNNFHFNPQ LSNGLFKINR ETVDPLQIPA KPQQNQQQIS NNSSSPSSMS 60 PSSSEGDSPD SQDTSNTMLK YITEMLMDEG EDLKTKPCML LDCLALQAAE KSFYDVLGQK 120 YPPSPTGNGD SAHDFSSGNS SVLGLSENCV VGHDSFVGMQ YIGHFRQGVE EASKFLPVNG 180 TFGTIDLDND LGMSVPFKDV DVSRISGSLR DKKNRQREEE SDGELRSSKQ SATFADDNSL 240 SDLFDEVLLC RGESRRSPCG SDESSETEVN KKNSRGRRRK GKKTRSKKQD NSVGVVDLWT 300 LLTQCAQAIS NYDQRTASEL LNQIRQHSSP SGDGNQRLAH YFANGLETRL AAGTPLYMPF 360 ASNETSAAEI LKAFQMFIKA CPFRRMSYFY ANRTIMKLAE KETTLHIIDF GILYGLQWPC 420 LIQRLSRRPG GPPKVRITGI ELPQPGFRPA ERVEQTGRRL AHYCKRFNVP FEYKVLAQKW 480 ETVKYEDLNV NRDELTIVTC LFRLKNVPDE TVVANSPRDR VLKLIRKINP DLFIHEVMNG 540 SFNTPFFNTR FKEALFHYSS L

Sequence ? help Back to Top

Protein Sequence Length: 561 aa Download sequence

MDNILDDFPN SFNNFHFNPQ LSNGLFKINR ETVDPLQIPA KPQQNQQQIS NNSSSPSSMS  60
PSSSEGDSPD SQDTSNTMLK YITEMLMDEG EDLKTKPCML LDCLALQAAE KSFYDVLGQK  120
YPPSPTGNGD SAHDFSSGNS SVLGLSENCV VGHDSFVGMQ YIGHFRQGVE EASKFLPVNG  180
TFGTIDLDND LGMSVPFKDV DVSRISGSLR DKKNRQREEE SDGELRSSKQ SATFADDNSL  240
SDLFDEVLLC RGESRRSPCG SDESSETEVN KKNSRGRRRK GKKTRSKKQD NSVGVVDLWT  300
LLTQCAQAIS NYDQRTASEL LNQIRQHSSP SGDGNQRLAH YFANGLETRL AAGTPLYMPF  360
ASNETSAAEI LKAFQMFIKA CPFRRMSYFY ANRTIMKLAE KETTLHIIDF GILYGLQWPC  420
LIQRLSRRPG GPPKVRITGI ELPQPGFRPA ERVEQTGRRL AHYCKRFNVP FEYKVLAQKW  480
ETVKYEDLNV NRDELTIVTC LFRLKNVPDE TVVANSPRDR VLKLIRKINP DLFIHEVMNG  540
SFNTPFFNTR FKEALFHYSS L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	1e-136	GRAS family protein