PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023517847.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

ARF

Protein Properties

Length: 718aa MW: 78241.7 Da PI: 7.758

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023517847.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.8	1e-23	146	247	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d+ g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + ++ XP_023517847.1 146 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyS-QQRPSQELVAKDLLGIKWKFRHIYRGQPRRHLLTTGWSAFVNKKRLVSGDAVLFL--RGND 237 99**************************963.3445679********************************************..4489 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+++++r+ XP_023517847.1 238 GELRLGIRRA 247 999**996 PP
2	Auxin_resp	105.2	7.8e-35	273	353	2	82
Auxin_resp 2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+s+k+ F+v+YnPra++s+Fv +++k++k++++++s+GmRf ++fet+d++ rr++G ++gv d+dp+rWp+S+WrsL XP_023517847.1 273 FNAISSKTSFSVYYNPRATSSQFVLPFHKFLKSINHSFSAGMRFSLSFETDDAADRRCTGRITGVGDVDPIRWPGSRWRSL 353 689****************************************************************************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 718 aa Download sequence
MAALIDLNTT EEDDAPSSAA SSASSSSASA LTSSPSPSLT SSICLELWHA CAGPLTSLPN 60 KGSLVVYFPQ GHLEQMQEFP ATAAYDLPPH ILCRVIDVQL HVRAEAGSDE VYAQVSLFPE 120 NEEEMTNDSE GEDFEGSEKT TTPHMFCKTL TASDTSTHGG FSVPRRAAED CFPPLDYSQQ 180 RPSQELVAKD LLGIKWKFRH IYRGQPRRHL LTTGWSAFVN KKRLVSGDAV LFLRGNDGEL 240 RLGIRRAAQL KSGSPFSNIC SQQLNSSSIM DVFNAISSKT SFSVYYNPRA TSSQFVLPFH 300 KFLKSINHSF SAGMRFSLSF ETDDAADRRC TGRITGVGDV DPIRWPGSRW RSLVVRWDDV 360 ETKRHGRVSP WEIEPSGSVS VASNVVPPGL KRTRIGLSPT ELEFPVPNGI GASDFGESLR 420 FQKVLQGQEI LGYSTPIDGD DNIRHPPEKR RSFPGLLGSG IALMRNGPRI PVTNSETSSR 480 GFMFDESFQF HKVLQGQEMY PSPFFGIATA TNEVKASGGY GPVDSVPLSR SKDGWPMTMQ 540 SENFLTRSSI PSVQVSSPSS VFMFQQSMVP VPSFNSYNRG NFTEQRTMNK STSHNSGTAF 600 MTDHNSSTEV PQGMRPTSLG VQKQLGLSHP STTEPAFTGN KAGCRLFGFS LTEGKNVGNT 660 TDKASPATTP INAGTTSVLS SNSGLRCPLK SPLMNKVVGS NCTKGAVQYH FANCSTYY

Sequence ? help Back to Top

Protein Sequence Length: 718 aa Download sequence

MAALIDLNTT EEDDAPSSAA SSASSSSASA LTSSPSPSLT SSICLELWHA CAGPLTSLPN  60
KGSLVVYFPQ GHLEQMQEFP ATAAYDLPPH ILCRVIDVQL HVRAEAGSDE VYAQVSLFPE  120
NEEEMTNDSE GEDFEGSEKT TTPHMFCKTL TASDTSTHGG FSVPRRAAED CFPPLDYSQQ  180
RPSQELVAKD LLGIKWKFRH IYRGQPRRHL LTTGWSAFVN KKRLVSGDAV LFLRGNDGEL  240
RLGIRRAAQL KSGSPFSNIC SQQLNSSSIM DVFNAISSKT SFSVYYNPRA TSSQFVLPFH  300
KFLKSINHSF SAGMRFSLSF ETDDAADRRC TGRITGVGDV DPIRWPGSRW RSLVVRWDDV  360
ETKRHGRVSP WEIEPSGSVS VASNVVPPGL KRTRIGLSPT ELEFPVPNGI GASDFGESLR  420
FQKVLQGQEI LGYSTPIDGD DNIRHPPEKR RSFPGLLGSG IALMRNGPRI PVTNSETSSR  480
GFMFDESFQF HKVLQGQEMY PSPFFGIATA TNEVKASGGY GPVDSVPLSR SKDGWPMTMQ  540
SENFLTRSSI PSVQVSSPSS VFMFQQSMVP VPSFNSYNRG NFTEQRTMNK STSHNSGTAF  600
MTDHNSSTEV PQGMRPTSLG VQKQLGLSHP STTEPAFTGN KAGCRLFGFS LTEGKNVGNT  660
TDKASPATTP INAGTTSVLS SNSGLRCPLK SPLMNKVVGS NCTKGAVQYH FANCSTYY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	0.0	ARF family protein