PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023517846.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

ARF

Protein Properties

Length: 719aa MW: 78270.8 Da PI: 7.7887

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023517846.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.8	1e-23	152	253	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d+ g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + ++ XP_023517846.1 152 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyS-QQRPSQELVAKDLLGIKWKFRHIYRGQPRRHLLTTGWSAFVNKKRLVSGDAVLFL--RGND 243 99**************************963.3445679********************************************..4489 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+++++r+ XP_023517846.1 244 GELRLGIRRA 253 999**996 PP
2	Auxin_resp	105.2	7.8e-35	279	359	2	82
Auxin_resp 2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+s+k+ F+v+YnPra++s+Fv +++k++k++++++s+GmRf ++fet+d++ rr++G ++gv d+dp+rWp+S+WrsL XP_023517846.1 279 FNAISSKTSFSVYYNPRATSSQFVLPFHKFLKSINHSFSAGMRFSLSFETDDAADRRCTGRITGVGDVDPIRWPGSRWRSL 359 689****************************************************************************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 719 aa Download sequence
MAALIDLNTT EEDDAPSSAA SSASSSSASA LTSSPSPSLT SSICLELWHA CAGPLTSLPN 60 KGSLVVYFPQ GHLEQMQEFP ATAAYDLPPH ILCRVIDVQL HQAEAGSDEV YAQVSLFPEN 120 EPIEHKMQEE MTNDSEGEDF EGSEKTTTPH MFCKTLTASD TSTHGGFSVP RRAAEDCFPP 180 LDYSQQRPSQ ELVAKDLLGI KWKFRHIYRG QPRRHLLTTG WSAFVNKKRL VSGDAVLFLR 240 GNDGELRLGI RRAAQLKSGS PFSNICSQQL NSSSIMDVFN AISSKTSFSV YYNPRATSSQ 300 FVLPFHKFLK SINHSFSAGM RFSLSFETDD AADRRCTGRI TGVGDVDPIR WPGSRWRSLV 360 VRWDDVETKR HGRVSPWEIE PSGSVSVASN VVPPGLKRTR IGLSPTELEF PVPNGIGASD 420 FGESLRFQKV LQGQEILGYS TPIDGDDNIR HPPEKRRSFP GLLGSGIALM RNGPRIPVTN 480 SETSSRGFMF DESFQFHKVL QGQEMYPSPF FGIATATNEV KASGGYGPVD SVPLSRSKDG 540 WPMTMQSENF LTRSSIPSVQ VSSPSSVFMF QQSMVPVPSF NSYNRGNFTE QRTMNKSTSH 600 NSGTAFMTDH NSSTEVPQGM RPTSLGVQKQ LGLSHPSTTE PAFTGNKAGC RLFGFSLTEG 660 KNVGNTTDKA SPATTPINAG TTSVLSSNSG LRCPLKSPLM NKVVGSNCTK VSNLSARAV

Sequence ? help Back to Top

Protein Sequence Length: 719 aa Download sequence

MAALIDLNTT EEDDAPSSAA SSASSSSASA LTSSPSPSLT SSICLELWHA CAGPLTSLPN  60
KGSLVVYFPQ GHLEQMQEFP ATAAYDLPPH ILCRVIDVQL HQAEAGSDEV YAQVSLFPEN  120
EPIEHKMQEE MTNDSEGEDF EGSEKTTTPH MFCKTLTASD TSTHGGFSVP RRAAEDCFPP  180
LDYSQQRPSQ ELVAKDLLGI KWKFRHIYRG QPRRHLLTTG WSAFVNKKRL VSGDAVLFLR  240
GNDGELRLGI RRAAQLKSGS PFSNICSQQL NSSSIMDVFN AISSKTSFSV YYNPRATSSQ  300
FVLPFHKFLK SINHSFSAGM RFSLSFETDD AADRRCTGRI TGVGDVDPIR WPGSRWRSLV  360
VRWDDVETKR HGRVSPWEIE PSGSVSVASN VVPPGLKRTR IGLSPTELEF PVPNGIGASD  420
FGESLRFQKV LQGQEILGYS TPIDGDDNIR HPPEKRRSFP GLLGSGIALM RNGPRIPVTN  480
SETSSRGFMF DESFQFHKVL QGQEMYPSPF FGIATATNEV KASGGYGPVD SVPLSRSKDG  540
WPMTMQSENF LTRSSIPSVQ VSSPSSVFMF QQSMVPVPSF NSYNRGNFTE QRTMNKSTSH  600
NSGTAFMTDH NSSTEVPQGM RPTSLGVQKQ LGLSHPSTTE PAFTGNKAGC RLFGFSLTEG  660
KNVGNTTDKA SPATTPINAG TTSVLSSNSG LRCPLKSPLM NKVVGSNCTK VSNLSARAV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	0.0	ARF family protein