PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023516645.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 182aa MW: 20145.3 Da PI: 8.1477

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023516645.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.8e-05	72	94	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k F+++ L H++ H XP_023516645.1 72 FECQYCLKEFRNSQALGGHQNAH 94 89******************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence
MGKKSSSYNL EEHESGLFSS TSNVEKKVKL FGFELNPSNN HELGSSCCLN GEGDESVNSS 60 TTVCFERAEP KFECQYCLKE FRNSQALGGH QNAHKKERLK KKKEKMELQA TNASLTYLLY 120 THNSSHITFT QNGAKFIHFD GSAPPPDKAV GYVSSSSSSS CLPVSNDHRR SSKSLDLHLG 180 FN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	97	103	ERLKKKK
2	98	104	RLKKKKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10480.1	1e-11	C2H2 family protein