PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023516367.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family C3H
Protein Properties Length: 381aa    MW: 42047.2 Da    PI: 7.4113
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023516367.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.91.7e-08138158526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C++f++ G Ck Gd+C FaHg
  XP_023516367.1 138 ACPDFRK-GSCKKGDSCEFAHG 158
                     7******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    
MIIGERHRPG PVVHITPLTI PEEPASETRF PYPLSGISVS SDGNGNGGDY SSYYLKEALA  60
ALQRYTNESE IESDSELSGR ESDVPVDAYS CDNFRIFEFK VRKCTRGRSH DWTECPFAHP  120
GEKARRRDPR KYHYSGTACP DFRKGSCKKG DSCEFAHGVF ECWLHPARYR TQPCKDGTNC  180
RRRVCFFAHT PEQLRVLPQQ SPRSAYSPEP FDESPVRQCL DGSCAKSLPF LSSPVSVSPS  240
ATPVDSPPLS PMTRSLGRSL GSSSINEMVA SLRNLHLSKV KSLPSSWNVQ IGSPGYPSRI  300
CHGFCSLPTT PTRAPTAPGV GLLDFSDHGL QEEPAMERVE SGRELRAKML EKLSKENSLD  360
LVDSSSSACT PDVGWVSELL K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-111C3H family protein