PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023516074.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

TCP

Protein Properties

Length: 392aa MW: 41789 Da PI: 7.688

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023516074.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	129.6	3.2e-40	70	186	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s + XP_023516074.1 70 PAKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSTMSVPsqlrsss 164 689******************************************************************99988888888888666665444444 PP TCP 89 .....................k 89 + XP_023516074.1 165 yynpnfslhqprrtlfpgfglS 186 4445555555544444444441 PP

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence
MEGGDDLHHH HHHHHHRPTF PFQLLEKKDD DAASCSTSPY PSLAISPDPT TTTTATATAS 60 VAEPSSKKPP AKRTSTKDRH TKVDGRGRRI RMPALCAARV FQLTRELGHK SDGETIEWLL 120 QQAEPAVIAA TGTGTIPANF TSLNISLRSS GSTMSVPSQL RSSSYYNPNF SLHQPRRTLF 180 PGFGLSSEPS STALLNFQST NIGNSLLQAK PELRDNTTSS LDLSDAAEEI SIGRKRRPST 240 EQELSSSSSS QHQMGGYLLQ SSAGSIPASH GGGQVPANFW MLTNTNNQVM GGDPIWTFPS 300 VNNSGLYRGT MSSGLHFMNF PAPVALVPGQ QFGSGAGGGN HSSSEGHLNI LAGLNPYRSV 360 STTGIMEQQG SGSHSHHGGG GDDRHDSTSH HS

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence

MEGGDDLHHH HHHHHHRPTF PFQLLEKKDD DAASCSTSPY PSLAISPDPT TTTTATATAS  60
VAEPSSKKPP AKRTSTKDRH TKVDGRGRRI RMPALCAARV FQLTRELGHK SDGETIEWLL  120
QQAEPAVIAA TGTGTIPANF TSLNISLRSS GSTMSVPSQL RSSSYYNPNF SLHQPRRTLF  180
PGFGLSSEPS STALLNFQST NIGNSLLQAK PELRDNTTSS LDLSDAAEEI SIGRKRRPST  240
EQELSSSSSS QHQMGGYLLQ SSAGSIPASH GGGQVPANFW MLTNTNNQVM GGDPIWTFPS  300
VNNSGLYRGT MSSGLHFMNF PAPVALVPGQ QFGSGAGGGN HSSSEGHLNI LAGLNPYRSV  360
STTGIMEQQG SGSHSHHGGG GDDRHDSTSH HS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47620.1	3e-68	TCP family protein