PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023516038.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 571aa MW: 65692.4 Da PI: 5.0963

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023516038.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.4	0.00098	542	560	2	20
EETTTTEEESSHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHi 20 +C+ Cg+ F ++ L++H+ XP_023516038.1 542 SCETCGEQFESRNKLHKHL 560 6*****************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 571 aa Download sequence
MASGKRCHYE VLGLHIDCTA DEIRSAYRKL ALQRHPDKLV QSGLSQSDAT AQFQELQHAY 60 EVLSDPKERA WYDSHRSQIL FSDAGSVNSN SVVPNLFPFF SNTVYSGYSD SGRGFYKIYS 120 DIFDKIYGNE INFAKKLGLR LDTIRNAPVM GNLDAPYTQV TAFYNYWLGF CTVMDFCWVD 180 QYDVMAGPNR KSRRLMEEDN KKLRKKAKRE YNETVRGLAE FVKKRDKRVT DMAMKRNIEM 240 EKKKEEERER KKKLEREKME KLKAFEEPDW AKVEEIEEDP EDESEEEKRA KELYCVLCGK 300 KFKSEKQWKN HEQSKKHKEK VAEFKESLDD EEESEEFVDE EQDEEEATLL DVGIDKLEEQ 360 FKESFDIEAE EAELSGSEYY DVHEVDRSDI VAEELGSNDD DDETDILEAM AAGLRNRKNA 420 ASLDQPKASS DKAHFESEND EPNPAEFENV RRGGKNRRAK KKGKGNDEAR NETEPDSQND 480 KNNGDDTSYQ QDSPSNSLAK EQRNSTQPAD RKAVAQKDTK TNTRHASKGK KSKATAKDSG 540 NSCETCGEQF ESRNKLHKHL GATGHAALKY R

Sequence ? help Back to Top

Protein Sequence Length: 571 aa Download sequence

MASGKRCHYE VLGLHIDCTA DEIRSAYRKL ALQRHPDKLV QSGLSQSDAT AQFQELQHAY  60
EVLSDPKERA WYDSHRSQIL FSDAGSVNSN SVVPNLFPFF SNTVYSGYSD SGRGFYKIYS  120
DIFDKIYGNE INFAKKLGLR LDTIRNAPVM GNLDAPYTQV TAFYNYWLGF CTVMDFCWVD  180
QYDVMAGPNR KSRRLMEEDN KKLRKKAKRE YNETVRGLAE FVKKRDKRVT DMAMKRNIEM  240
EKKKEEERER KKKLEREKME KLKAFEEPDW AKVEEIEEDP EDESEEEKRA KELYCVLCGK  300
KFKSEKQWKN HEQSKKHKEK VAEFKESLDD EEESEEFVDE EQDEEEATLL DVGIDKLEEQ  360
FKESFDIEAE EAELSGSEYY DVHEVDRSDI VAEELGSNDD DDETDILEAM AAGLRNRKNA  420
ASLDQPKASS DKAHFESEND EPNPAEFENV RRGGKNRRAK KKGKGNDEAR NETEPDSQND  480
KNNGDDTSYQ QDSPSNSLAK EQRNSTQPAD RKAVAQKDTK TNTRHASKGK KSKATAKDSG  540
NSCETCGEQF ESRNKLHKHL GATGHAALKY R

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	190	227	RKSRRLMEEDNKKLRKKAKREYNETVRGLAEFVKKRDK
2	201	209	KKLRKKAKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74250.1	1e-160	C2H2 family protein