PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023515984.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | C3H | ||||||||
Protein Properties | Length: 403aa MW: 43914.6 Da PI: 7.7368 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.7 | 1.4e-11 | 48 | 74 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p XP_023515984.1 48 PGEPDCSYYIRTGLCRFGATCRFNHPP 74 5789*********************97 PP | |||||||
2 | zf-CCCH | 39 | 1.4e-12 | 95 | 119 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ XP_023515984.1 95 QPECQYYLKTGTCKFGATCKFHHPR 119 799********************96 PP | |||||||
3 | zf-CCCH | 34.9 | 2.5e-11 | 141 | 165 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++ rtG+Ck+G++CkF+H++ XP_023515984.1 141 EPECAYYIRTGQCKFGNTCKFHHPQ 165 799********************97 PP | |||||||
4 | zf-CCCH | 38 | 2.7e-12 | 259 | 285 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ XP_023515984.1 259 PGQPECQFYMKTGDCKFGAVCRFHHPR 285 5789*********************96 PP | |||||||
5 | zf-CCCH | 40.3 | 5.3e-13 | 305 | 331 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ XP_023515984.1 305 PGEPLCIFYSRYGICKFGPSCKFDHPM 331 589**********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence |
MEYDSGIPMS VTEGHSSALT PSLREDALWQ MNLGSGEIMG SGSYPVRPGE PDCSYYIRTG 60 LCRFGATCRF NHPPNRELAI ATARMKGEFP ERIGQPECQY YLKTGTCKFG ATCKFHHPRD 120 KAGIAGRVAL NIIGYPLRPS EPECAYYIRT GQCKFGNTCK FHHPQPTNMM VSLRGSPIYP 180 TVQSPTPGQQ SYPGGSTNWS RASFIPSPRW EGPSSYASLI LPQGVLSVPG WNAFNDQLGS 240 VSSSESPQQT RENVFPERPG QPECQFYMKT GDCKFGAVCR FHHPRERVLP APDCVLSPIG 300 LPLRPGEPLC IFYSRYGICK FGPSCKFDHP MGIFTYNLSA AAAAAASSAN APVQHLFGTS 360 SGSTALNLSS EGLVEAGSAK PRRLSISETR EMPSDDENID TEG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-179 | C3H family protein |