PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023515803.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 423aa MW: 46799.3 Da PI: 9.1146

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023515803.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38	3e-12	357	402	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L+el+P+ +k + +++L +AveYIk Lq XP_023515803.1 357 SIAERVRRTKISERMRKLQELVPNM----DKQTNTSDMLDLAVEYIKGLQ 402 689*******************7....688***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence
MEADFQQHHH ILHEQYQQQP QMNSGLTRYR SAPSSYFRRL TDREFCDQFF NRPSSPETER 60 IFARFMTSGT AGGGGGSPEV SSQNLAESPK NAQAGEVFIA TEANQQTPYM RNETKAIHQL 120 PSNVNGNYPP ASSTPSFYQS SMKPPLPNQG MISGTEGSGS MGIDLKPRIR TDGGRTSNLI 180 RQSSSPAGLF DHIKINDGGY AALRGMGKFG TGNSVNEEAS LPSPSRLKRS LPSHSSGLMS 240 PMAGIEKKCI REKTNQDTKG FAESKTNDYG STNFPVGSWE ESAVMSDNDE DVKSYSNFNI 300 PDTQKVDPVN RPPMLAHHLS LPNTSAEMNA IEKILQFSDS VPCKLRAKRG CATHPRSIAE 360 RVRRTKISER MRKLQELVPN MDKQTNTSDM LDLAVEYIKG LQKQVQTLSD NRAKCKCSHS 420 QLQ

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence

MEADFQQHHH ILHEQYQQQP QMNSGLTRYR SAPSSYFRRL TDREFCDQFF NRPSSPETER  60
IFARFMTSGT AGGGGGSPEV SSQNLAESPK NAQAGEVFIA TEANQQTPYM RNETKAIHQL  120
PSNVNGNYPP ASSTPSFYQS SMKPPLPNQG MISGTEGSGS MGIDLKPRIR TDGGRTSNLI  180
RQSSSPAGLF DHIKINDGGY AALRGMGKFG TGNSVNEEAS LPSPSRLKRS LPSHSSGLMS  240
PMAGIEKKCI REKTNQDTKG FAESKTNDYG STNFPVGSWE ESAVMSDNDE DVKSYSNFNI  300
PDTQKVDPVN RPPMLAHHLS LPNTSAEMNA IEKILQFSDS VPCKLRAKRG CATHPRSIAE  360
RVRRTKISER MRKLQELVPN MDKQTNTSDM LDLAVEYIKG LQKQVQTLSD NRAKCKCSHS  420
QLQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51140.1	2e-77	bHLH family protein