PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023515283.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GRAS
Protein Properties Length: 452aa    MW: 51754.7 Da    PI: 5.4065
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023515283.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS314.81.8e-96644513374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     +lL ecA+a+s++d +++++lL+ l+elasp+gd+ q+la yf++AL  r ++++ ++yk+l + ++++++ +++l+    f+evsP+++f+h++
  XP_023515283.1  64 TLLNECARAISDKDSNKIHHLLWMLNELASPYGDSDQKLAYYFLQALFCRATETGLTCYKTLVTVSEKNYSFDSALKLILKFQEVSPWMTFGHVA 158
                     689***********************************************************9999998888888888888************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.vakrledlel 191
                      N aIlea+e+e+++HiiD++ + ++QWp+Ll++La+R++++p+l++T+v+  +++ k  ++e+g+r++kfA+ +gvpfefn++   ++l+dle 
  XP_023515283.1 159 SNGAILEALERETKLHIIDISDTLCTQWPTLLESLATRNDDTPHLKLTVVST-TTKVKSLMKEIGQRMEKFARLMGVPFEFNPItNLNQLSDLEN 252
                     ****************************************************.6678999***********************95556******* PP

            GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleaklpreseerik 284
                     e+L+v+++Ea+a+n+  +l ++      +e+ r++v++++ksl+P+v+++ve+ead   ++++Fl  f e+l++y+  f++le+++ ++s+e+  
  XP_023515283.1 253 EALKVEEDEAIAINCNGALRTVK-----IEE-RNAVISMLKSLKPRVLTIVEEEADFisSKNKFLSCFDECLRFYTLYFEMLEESFEATSNEKLG 341
                     *****************999997.....666.89**********************9867889******************************** PP

            GRAS 285 vErellgreivnvvacegae...r...rerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee................sgs 357
                     +Ere  +r+iv ++ c ++    r    er+e+ ++W+erlee GF+++++ +++++++k+ll+++k  g+ + ++                s  
  XP_023515283.1 342 LERE-CSRNIVRLLGCGNETeleReltSERREKGKQWSERLEERGFSSARFCDDVMDDVKALLKRYK-PGWALMHRtgaidtnrdeeeggddSSG 434
                     ****.89********9765422232226899************************************.666666333444455556667775778 PP

            GRAS 358 lvlgWkdrpLvsvSaWr 374
                     ++l+Wk++p+v++SaW+
  XP_023515283.1 435 IYLTWKEEPVVWISAWK 451
                     88**************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    
MDITLFTAKE APTIFFSQSH DHRHRHRLHR VRFPNLAMQS STSQSSEYSL DHSPPAAAGK  60
WSSTLLNECA RAISDKDSNK IHHLLWMLNE LASPYGDSDQ KLAYYFLQAL FCRATETGLT  120
CYKTLVTVSE KNYSFDSALK LILKFQEVSP WMTFGHVASN GAILEALERE TKLHIIDISD  180
TLCTQWPTLL ESLATRNDDT PHLKLTVVST TTKVKSLMKE IGQRMEKFAR LMGVPFEFNP  240
ITNLNQLSDL ENEALKVEED EAIAINCNGA LRTVKIEERN AVISMLKSLK PRVLTIVEEE  300
ADFISSKNKF LSCFDECLRF YTLYFEMLEE SFEATSNEKL GLERECSRNI VRLLGCGNET  360
ELERELTSER REKGKQWSER LEERGFSSAR FCDDVMDDVK ALLKRYKPGW ALMHRTGAID  420
TNRDEEEGGD DSSGIYLTWK EEPVVWISAW KP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-133GRAS family protein