PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023515068.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB
Protein Properties Length: 250aa    MW: 28322.7 Da    PI: 8.559
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023515068.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd +l + v+ +G  +W++ ++  g+ R++k+c++rw +yl
   XP_023515068.1 14 RGPWSPEEDRILTNFVQDHGHSNWRALPKQAGLLRCGKSCRLRWTNYL 61
                     89******************************99************97 PP
2Myb_DNA-binding53.74.8e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE++ +++++++lG++ W+tIa++++ gRt++++k+ w+++l
   XP_023515068.1  67 RGNFTKEEEDVIINLHELLGNR-WSTIAAKLP-GRTDNEIKNVWHTHL 112
                      89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    
MGRAPCCEKM GLKRGPWSPE EDRILTNFVQ DHGHSNWRAL PKQAGLLRCG KSCRLRWTNY  60
LRPDIKRGNF TKEEEDVIIN LHELLGNRWS TIAAKLPGRT DNEIKNVWHT HLKKRLQKPI  120
KTPPKSKNKT KKQTKSKSSS NYSSPMAITN QTHLPICSSS MSPSQQSSTS EICSSLTTDA  180
SMAENEYYSY TADDTAAPPL IDESFWSDAA ENYNSNSDSS SSYYNEENKD MEFWYNVFVK  240
AGGIPGLPEF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.11e-77MYB family protein