PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023513806.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C3H

Protein Properties

Length: 295aa MW: 33586.1 Da PI: 9.0143

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023513806.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.4	3.2e-10	117	138	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 + Cr f+r G C yGd+C+F H XP_023513806.1 117 KVCRQFQRRGKCAYGDQCRFLH 138 68******************** PP
2	zf-CCCH	36.5	8e-12	198	223	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC ++ tG+C+yG+ C+FaHg+ XP_023513806.1 198 KTRLCYLWQTTGHCSYGEVCRFAHGE 223 8***********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence
MSDPYPFHQV TPPDHEARGV WPPLPPRYTV GRFPSFYRPT MSEVVPSRVM PSNFEIPQWN 60 NVNIGLHDNE LEWRYALASN DHTRGWLPSW RGIDFHENRL PECPILNNRT GMSTEMKVCR 120 QFQRRGKCAY GDQCRFLHKI PENTKDFGFS TQNHEVRAVA SGHVMDGKSM FDQFEEVRSK 180 VQTKIVARSE IPMPVNCKTR LCYLWQTTGH CSYGEVCRFA HGEAELQKLE SCSASERGRV 240 GGASATTKAA AAAGLRCSRG IGTDCKNKGS SRMKQLFKSK EHKKLIGIYA DWLEN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	4e-15	C3H family protein