PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023513805.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GATA
Protein Properties Length: 333aa    MW: 36693.9 Da    PI: 6.7786
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023513805.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.22e-17228262135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +C++ kTp+WR gp g+ktLCnaCG++y++ +l
  XP_023513805.1 228 CLHCQAEKTPQWRTGPMGPKTLCNACGVRYKSGRL 262
                     99*****************************9885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    
MEVNKYLIGG YFDAGVGQFS PEKTKAAEHF TIDDLLDFSN EDAIMTDGCF DNVAGTSTDS  60
STVTAVDSCN SSVSGSDHPF NGNIGSRSFD ESRFSDDLCV PYEELAELEW LSNFVDDSFS  120
TEGKDLQALN YLFNSHSISK PQTPETSSSS ELPPSVSIPS DSSKSSPRFP AETPLPCKAR  180
SKRSRTAPCD WTTRLLHLLT PADHKPPKSS SLSKKKDALN GESTGRKCLH CQAEKTPQWR  240
TGPMGPKTLC NACGVRYKSG RLVPEYRPAA SPTFISAKHS NSHRKVLELR RQKEVQMAQQ  300
HQFINQSSIF GVTNGCDEYL ISHHMGPTVR HMM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.12e-63GATA family protein