PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023513194.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

LBD

Protein Properties

Length: 351aa MW: 39510.8 Da PI: 7.4999

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023513194.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137.4	5e-43	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv kll++l+ ++reda++sl+yeAe r+rdPvyG+vg+i+ lq++l+q++++l XP_023513194.1 7 PCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNASQREDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQSDLY 101 7********************************************************************************************99 PP DUF260 96 llkee 100 +k+e XP_023513194.1 102 NAKKE 106 98876 PP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence
MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFANVH KVFGASNVAK LLNELNASQR 60 EDAVNSLAYE AEFRLRDPVY GCVGLISVLQ HKLKQMQSDL YNAKKELASY VGPQAMIPIL 120 QPSTAIMTTN PQGPVTSPSS SVLLPYNMSP MFGIPSSGGG GSSQQMLIRE SPHQQQQHHH 180 QIQQQQQQLF EAQQLAAAVA AREQQEMFRA YEQKQTQQQQ QQQQQQQQHS PSQRQHELLR 240 FNGFDPAGVG AGSGAGAGGF NNQMNSPSDL TLGTFPDNSY QIQTQPEHSH SHSHHHHPLQ 300 VQLFPQPQQT QLDQSQQQQQ QPHPHRXSDR SDDAFFLFLF FLSHKWCNII W

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence

MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFANVH KVFGASNVAK LLNELNASQR  60
EDAVNSLAYE AEFRLRDPVY GCVGLISVLQ HKLKQMQSDL YNAKKELASY VGPQAMIPIL  120
QPSTAIMTTN PQGPVTSPSS SVLLPYNMSP MFGIPSSGGG GSSQQMLIRE SPHQQQQHHH  180
QIQQQQQQLF EAQQLAAAVA AREQQEMFRA YEQKQTQQQQ QQQQQQQQHS PSQRQHELLR  240
FNGFDPAGVG AGSGAGAGGF NNQMNSPSDL TLGTFPDNSY QIQTQPEHSH SHSHHHHPLQ  300
VQLFPQPQQT QLDQSQQQQQ QPHPHRXSDR SDDAFFLFLF FLSHKWCNII W

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	9e-75	LBD family protein