PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023512246.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | C2H2 | ||||||||
Protein Properties | Length: 233aa MW: 25706.7 Da PI: 5.3416 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.5 | 0.00092 | 93 | 112 | 2 | 21 |
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C+ Cgk+F ++ L H+r XP_023512246.1 93 PCTECGKTFWSWKALFGHMR 112 5******************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence |
MSTKTTPPPS FYSFTSYSLP IMDSPSRSLF PFTVFPPPSP SHSSLPAPNS RRKRTKFIRP 60 TTAAAAPPLH SPSTPKSKHA KKPDPTAPKI TRPCTECGKT FWSWKALFGH MRCHPERQWR 120 GINPPPNFRR STATDEDHEI AACLIMLANG PNAIDPTEAV TETDGDCREN QESAAAALVF 180 GQRGVKEEEE DDDDDDDDGY LDLNLPPPME DIEEHSSSSY CSGIVLDLRL GPN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 51 | 78 | RRKRTKFIRPTTAAAAPPLHSPSTPKSK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35280.1 | 9e-38 | C2H2 family protein |