PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023512054.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 363aa MW: 39827.6 Da PI: 8.3352

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023512054.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15	7.1e-05	125	148	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ Cg+ F+ + +L++H++ H XP_023512054.1 125 FPCTACGEIFPKHQLLEQHQSAkH 148 89******************9877 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
MAPTAGSLCN KFLALLLLIV HVGCFLLTTA DHRSRRRPPP PKKATPTPSC LKPHKALTSS 60 YSFLKRIFSS KTCKMAIETA RPPTPARTSQ EISPPVETPT AGTPQDSDIT TAETNQFVHI 120 SNDIFPCTAC GEIFPKHQLL EQHQSAKHAV SELADSDSGK NIVRIIFETG WTSKEKSPKI 180 VRILKIHNSP KIVSRFEEYR ESVKAKAAAR NGAVKRRDER CIADGNELLR FHCATFLCDL 240 GQNGNSSLCG QQFCSICGII KSGFSHKLDG ISTLSSSWRA HVAIPEDIEE EFKFLNVKRA 300 ILVCRVIAGR VGSDADEPEK DGEGFHSVVG RSGSGAQTTL DEEELLVFNP RAVLPCFAIV 360 YEI

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

MAPTAGSLCN KFLALLLLIV HVGCFLLTTA DHRSRRRPPP PKKATPTPSC LKPHKALTSS  60
YSFLKRIFSS KTCKMAIETA RPPTPARTSQ EISPPVETPT AGTPQDSDIT TAETNQFVHI  120
SNDIFPCTAC GEIFPKHQLL EQHQSAKHAV SELADSDSGK NIVRIIFETG WTSKEKSPKI  180
VRILKIHNSP KIVSRFEEYR ESVKAKAAAR NGAVKRRDER CIADGNELLR FHCATFLCDL  240
GQNGNSSLCG QQFCSICGII KSGFSHKLDG ISTLSSSWRA HVAIPEDIEE EFKFLNVKRA  300
ILVCRVIAGR VGSDADEPEK DGEGFHSVVG RSGSGAQTTL DEEELLVFNP RAVLPCFAIV  360
YEI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29660.1	1e-108	C2H2 family protein