PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023511670.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C3H

Protein Properties

Length: 338aa MW: 36953.6 Da PI: 7.7265

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023511670.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25	3.2e-08	75	99	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ XP_023511670.1 75 FKTKLCCKFRA-GTCPYITNCNFAHS 99 69*******.***********8 PP
2	zf-CCCH	18.7	3e-06	149	174	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ XP_023511670.1 149 YKGRHCKKFYTEEGCPYGDSCTFLHD 174 78888********************7 PP
3	zf-CCCH	42.4	1.2e-13	219	244	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg XP_023511670.1 219 WKTRICNKWELTGYCPFGSKCHFAHG 244 8************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence
MSSENWPGEV WATEEEYRAW NNGGGDGSID TPSNSSYDQR QSQSRSGSEP PNKKSRSSQD 60 VTSSNRSKAI GKMFFKTKLC CKFRAGTCPY ITNCNFAHSI EELRRPPHNW QQEIVAAHEE 120 EKVFSEPREE FQIPSLGTSN FGSESQRSYK GRHCKKFYTE EGCPYGDSCT FLHDEQSKNR 180 ESVAISLGPG GYSGGGGGGG GGGGGGGSGN GSNSKPSNWK TRICNKWELT GYCPFGSKCH 240 FAHGAAELHR YGGGLMETET RDSSSAPPDL KQGVLPKAPG DTLVASVPSL PHSDVYHIVV 300 PSQRSTIVIQ RSGQRTHQKW KGPDKISRIY GDWIDDIE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-124	C3H family protein