PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023511590.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family HD-ZIP
Protein Properties Length: 789aa    MW: 87718.5 Da    PI: 6.1673
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023511590.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.62.8e-2080135156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t+ q++e+e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  XP_023511590.1  80 KKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 135
                     688899***********************************************998 PP
2START159.82.1e-502765013206
                     HHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS...............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS
           START   3 aeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv..............dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 
                     a +  +elvk+  ++ep+Wv++s  e g++ l  +e ++               +++ea r+s+vv+m++ +lv  +ld + +W e ++    ka
  XP_023511590.1 276 AVSSIAELVKMCRSTEPLWVRDS--ESGKDILNVEEHARMfpwplnlkqhlineFRTEATRDSAVVIMNSITLVDAFLDAN-KWMELFPsivaKA 367
                     677889*****************..66666666666655567777899999******************************.******99999** PP

                     EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEE CS
           START  80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtw 166
                      t++viss       g lqlm+aelqalsplvp R+  f+R+++q   +g+w+ivd  +d   +   ++s+ R ++ pSg++i++++ng+s+vtw
  XP_023511590.1 368 RTIQVISSSvsghasGSLQLMYAELQALSPLVPtREAHFLRCCQQnADEGSWAIVDFPIDTFHDSL-QHSFPRYRRKPSGCIIQDMPNGYSRVTW 461
                     *********************************************9999*********99999976.9*************************** PP

                     EE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 167 vehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     veh + +++ +h++++++v+sg+a+ga +w+a lqrqce+
  XP_023511590.1 462 VEHGEIEEKPIHQIFNHFVHSGMAFGAHRWLAILQRQCER 501
                     **************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 789 aa     Download sequence    
MYGDCQVISS NMGTNINPNF NFISNFQHFS SILPKEENGV LRGKEDMESG SGSEQLVEEH  60
QGIIEMDSNN DNVLHQNLKK KRYHRHTARQ IQEMEALFKE CPHPDDKQRL KLSQELGLKP  120
RQVKFWFQNR RTQMKAQHDR ADNAILRAEN ETLKNENYRL QTALRNIICP SCGGQGILGE  180
PSLDEQQLRL ENARLRDQLE QVCSMTTRYT GRPIEGMPMQ PSLDLDMNIY SRQYTEAMVS  240
SSDMMSMPSM LPPEAAHFSK GDLLIDEEKT LAMDLAVSSI AELVKMCRST EPLWVRDSES  300
GKDILNVEEH ARMFPWPLNL KQHLINEFRT EATRDSAVVI MNSITLVDAF LDANKWMELF  360
PSIVAKARTI QVISSSVSGH ASGSLQLMYA ELQALSPLVP TREAHFLRCC QQNADEGSWA  420
IVDFPIDTFH DSLQHSFPRY RRKPSGCIIQ DMPNGYSRVT WVEHGEIEEK PIHQIFNHFV  480
HSGMAFGAHR WLAILQRQCE RIASLMARNI SDLGVIPSPE ARQNLMKLAQ RMIRTFSVNI  540
STSGGQSWTA LSESPDDTVR ITTRKIVEPG QPNGVILSAV STTWLPYPHY RVFDLLRDER  600
RRSQLEVLSN GNSLHEVAHI ANGSHPGNCI SLLRINVASN SSQHVELMLQ ESCTDQSGSL  660
VVYATIDVDS IQLAMSGEDP SCIPLLPIGF SIVPVVGSTV DGHPSPPPED GVANSGCLLT  720
VGLQVLASTI PSAKLNLSSV TAINNHLCNT VHQINAALGS PASIENGNTI AEPNNAPAPA  780
PAPAPAPKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0HD-ZIP family protein