PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022964047.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family C3H
Protein Properties Length: 300aa    MW: 34084.7 Da    PI: 9.0147
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022964047.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.43.3e-10122143425
                     ---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                     + Cr f+r G C yGd+C+F H
  XP_022964047.1 122 KVCRQFQRRGKCAYGDQCRFLH 143
                     68******************** PP
2zf-CCCH36.58.2e-12203228227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     kt+lC  ++ tG+C+yG+ C+FaHg+
  XP_022964047.1 203 KTRLCYLWQTTGHCSYGEVCRFAHGE 228
                     8***********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    
MSDPYPFHQV TPPDHEARGV WPPLRPPPLP PRYTVGRFPS FYQPTMSEIV PSRVMPSNFE  60
IPQWNNVHIG LHDNELEWRY ALASNDHTRG WLPSWRGIEF HENRLPECPI VNSRTGMSTE  120
MKVCRQFQRR GKCAYGDQCR FLHKIPENTK DFGSSSQNHE VRAVASGHVM DGKSMFDQFE  180
EVRSKVQTKI VARSEIPMPV NCKTRLCYLW QTTGHCSYGE VCRFAHGEAE LQKLESCSTS  240
ERGRVGGASA TTKAAAAAGL RCSRGIGTDC KNKGSSRMKQ LFKSKEHKKL IGIYADWLEN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.13e-15C3H family protein