PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022963190.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB

Protein Properties

Length: 433aa MW: 49291.3 Da PI: 6.9973

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022963190.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.8	4.4e-17	233	279	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT++Ed llv++v ++G + W+ Ia+++ gR +kqc++rw+++l XP_022963190.1 233 KGQWTPQEDRLLVQLVDEYGVKKWSQIAKMLE-GRVGKQCRERWHNHL 279 799***************************.***********97 PP
2	Myb_DNA-binding	52.6	1.1e-16	285	327	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ W+++Ed +l++a+k G++ W+ Iar+++ gRt++ +k++w+ XP_022963190.1 285 KDTWSEDEDRILIEAHKDIGNR-WAEIARRLP-GRTENTIKNHWN 327 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence
MEFDSNFKDD LPLLSSFFSD KPESKRKLND DDNDDDTGEF SAMELATSPS SSKGLFHNLQ 60 LHNFNRDREH DHDHNHNHNR YHQYLHHFPI NGSDSSSHHE LDRHQFSIAG SLQTLLSGMP 120 TQTFDPNFQP FGNEFSKDHT FENGAKFMHG LLGSRAVWTN FPGNFVPQFS QPPNSSSSSS 180 THLGLGPATV GRWFLDEISY NTDNGYDQNK KKKRIQSRKE NRPPPTKLPN IVKGQWTPQE 240 DRLLVQLVDE YGVKKWSQIA KMLEGRVGKQ CRERWHNHLR PDIRKDTWSE DEDRILIEAH 300 KDIGNRWAEI ARRLPGRTEN TIKNHWNATK RRQNSKKLKG KYRDSNSNSS ILQNYINSVT 360 AGDRKISDSM PQLVDSHSPA AANGGGFYFE FGSGSGSGSG SGSGTEMECL NLMQNDEMKS 420 EMDLLELICQ GNL

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence

MEFDSNFKDD LPLLSSFFSD KPESKRKLND DDNDDDTGEF SAMELATSPS SSKGLFHNLQ  60
LHNFNRDREH DHDHNHNHNR YHQYLHHFPI NGSDSSSHHE LDRHQFSIAG SLQTLLSGMP  120
TQTFDPNFQP FGNEFSKDHT FENGAKFMHG LLGSRAVWTN FPGNFVPQFS QPPNSSSSSS  180
THLGLGPATV GRWFLDEISY NTDNGYDQNK KKKRIQSRKE NRPPPTKLPN IVKGQWTPQE  240
DRLLVQLVDE YGVKKWSQIA KMLEGRVGKQ CRERWHNHLR PDIRKDTWSE DEDRILIEAH  300
KDIGNRWAEI ARRLPGRTEN TIKNHWNATK RRQNSKKLKG KYRDSNSNSS ILQNYINSVT  360
AGDRKISDSM PQLVDSHSPA AANGGGFYFE FGSGSGSGSG SGSGTEMECL NLMQNDEMKS  420
EMDLLELICQ GNL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27785.1	3e-72	MYB family protein