PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022962701.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | C3H | ||||||||
Protein Properties | Length: 862aa MW: 95924 Da PI: 8.8103 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.7 | 3.7e-07 | 283 | 302 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ffa+ GtC+ G +Ck++H XP_022962701.1 283 ICNFFAA-GTCRNGKNCKYSH 302 8**9999.************* PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 862 aa Download sequence |
MSGSGRKRSS KWDLREESRP GWISPELASD DGSKRSGMET TNTVSKSKKD WGLLSKEPLS 60 ETRDSHKEDY TNKGYNKNME GTAEWDADKS YSTRMSPGLD GWRRHSSNPS DRNDWSRSVR 120 GRSRSRSWSR SRSRSRTPPR SFKRDSGFHD RNRNRTRVST QLCRDFASGR CRRGGGCPFL 180 HAENQNLDDS WESRNKKGGR SLRSTPHDFR DYSRSGRSAA PCTDFVKGRC HRGESCKYPH 240 DSGFHELSRG SSNDISRDRE NDRSKEAYLS RGEREPSSSS LVICNFFAAG TCRNGKNCKY 300 SHQSQPCASL ERKSSADRWE QVECSDGRER LWDGSKSNEL ASGSDFTQLR EEKNKQIASQ 360 ESRYTWPSEL KGGHSLNNES KIQWDQAASI KTVQNSKNDT ILSKPEDAGG CIGTSDSRGH 420 RKWPSDDMEM SPDWHFPVQP SNHVVKGDCN IILDSGSQTS MALATLSHAI VQEALAKKQD 480 VTIEPLTVDN THFRQNHNLT KDVTMASAFN DKITIDKTIA SHAEGNPSGN IVLGQKMAYH 540 TDHPGGSVMN PNVADGIFRV KPREDDRSMP GINPVTTITP NMVTSEQITQ LTNLSVSLAQ 600 YFGNVQPLPQ LYASLSAHNV SEIPSFPYTD APVGALGTLM KTSPIIECSK QHDSTVCNSL 660 EVKKLEATKI PSDSLLNFIG QKSMTDAKDE VQLPIFPLSS DPSNKIVISA KETPNESDAI 720 NHGKRAAEGE ANNKKNGDGD NENRTEAGAN EDSEENDTTE NANGNDGVHD KKKGKDTKGI 780 RAFKFALVEF VKELLKPTWK EGHISKDVYK TIVKKVVDKV TGTLQGGHIP QTQEKIDQYL 840 SFSKSKLTKL VQAYVDRVQK TS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 4e-11 | C3H family protein |