PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022961073.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family GRAS
Protein Properties Length: 617aa    MW: 67383.2 Da    PI: 5.3828
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022961073.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS449.81.8e-1372436091374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv++L++cAeav++++++ a+al++++  la +++ +m+++a+yf+eALa+r++r    +y+      +s    s+ l++   f+e++P+lkf+h
  XP_022961073.1 243 LVHTLMACAEAVQQENMKIAEALVKHIGLLAVSQAGAMRKVATYFAEALARRIYR----IYSPQDGFYSS---YSDILQM--HFYETCPYLKFAH 328
                     689****************************************************....77544444443...4444443..5************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     +taNqaIlea+++++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp++R+Tg+g+p++g  +++l+++g++La++A ++gv+fefn +v+++l++l
  XP_022961073.1 329 FTANQAILEAFATASRVHVIDFSLNQGMQWPALMQALALRPGGPPTFRLTGIGPPKQGnTTDSLQQVGWKLAQMAGAIGVEFEFNQIVCSNLANL 423
                     ********************************************************99999********************************** PP

            GRAS 190 eleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres..e 280
                     ++ +L+++p   Ea+aVn+v+ lhrll++++++e+    vL  +k ++Pk+v++veqea+hn+  F++rf+eal+yys +fdsle++    +  +
  XP_022961073.1 424 NPAALEIRPaaVEAVAVNSVFDLHRLLARPGAIEK----VLGSIKATKPKIVTIVEQEANHNGRVFMDRFTEALHYYSNMFDSLEVSSTGFEpaS 514
                     *********999***********************....*********************************************87754333459 PP

            GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     e++ +++++lgr+i+nvvaceg +r+erhe+l +Wr r+e+aGF+pv+l+++a kqa++ll+ ++ ++gyrvee++g+l+lgW++rpL+++SaW+
  XP_022961073.1 515 EDVLLSEVYLGRQICNVVACEGPDRVERHESLTHWRTRMESAGFNPVHLGSNAFKQASMLLALFAgGEGYRVEENNGCLMLGWHTRPLIATSAWQ 609
                     9*********************************************************************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    
MKMKMKMKMK RELEDDRSTG GGVYGGGRQG VGKGECSSVS GGKVKMWEEE EQEVGGGGMD  60
ELLAVLGYKV RASDMADVAQ KMEQLEMVMG SVKEDGISHL ASDTVHYNPS DLSAWIQNML  120
SEFNNTPNHF NSSSTSTTPP PQSSQYSNPH SRIQSRPSRL YDDDSEYDLS AIPGVAVFPS  180
KDSSTEIETN SRKRVKIEGE SSVNLLPPSP PFVAAAAAAG IVSEPSRPVV VVEEGSQDAG  240
IQLVHTLMAC AEAVQQENMK IAEALVKHIG LLAVSQAGAM RKVATYFAEA LARRIYRIYS  300
PQDGFYSSYS DILQMHFYET CPYLKFAHFT ANQAILEAFA TASRVHVIDF SLNQGMQWPA  360
LMQALALRPG GPPTFRLTGI GPPKQGNTTD SLQQVGWKLA QMAGAIGVEF EFNQIVCSNL  420
ANLNPAALEI RPAAVEAVAV NSVFDLHRLL ARPGAIEKVL GSIKATKPKI VTIVEQEANH  480
NGRVFMDRFT EALHYYSNMF DSLEVSSTGF EPASEDVLLS EVYLGRQICN VVACEGPDRV  540
ERHESLTHWR TRMESAGFNP VHLGSNAFKQ ASMLLALFAG GEGYRVEENN GCLMLGWHTR  600
PLIATSAWQL DADESTQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.10.0GRAS family protein