PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022960571.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

FAR1

Protein Properties

Length: 876aa MW: 99060.5 Da PI: 6.3285

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022960571.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.4	2.1e-17	60	132	2	88
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fY+eYA+++GFs + + ++sk +g i++r+fvC +e ++++ + C+a+l++++++++kw+vtk+++eH+H+ XP_022960571.1 60 FYDEYARRIGFSSKLGQLSRSKSDGIIISREFVCARECSERKPAGS--------------CDAMLRIELKDQDKWVVTKFVKEHSHS 132 9**********************************999988776..............************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 876 aa Download sequence
MDEMVGVDGL AHPAVVDDSD VDPHEGEINT AEDSAFHDED GIIEPYEGME FESEGNAKTF 60 YDEYARRIGF SSKLGQLSRS KSDGIIISRE FVCARECSER KPAGSCDAML RIELKDQDKW 120 VVTKFVKEHS HSTVNLSKVH YLRPRRHFAG AAKTMTEAYT GSAGVPSGVM SVLMDDNRAP 180 AGKTRGGWKT SQAEANRSLN NASTMNYPIR NAGQKRTLGR EAQNMLEYFK KMQSENPGFF 240 YAIQLDEDNR MANVFWADAR SRAAYSHFGD AVTLDTMYRV NQFRVPFAPF TGVNHHGQTI 300 LFGCALLLDE SEASFVWLFK TFLTAMNNRQ PVSVTTDQDR AIHVAIAQVF PDARHCISKW 360 HVLREGQQKL AHVCLTYPNF QVELYNCINL TETIEEFESA WNCIIEKYNL GRNDWLQSLY 420 NARAQWVPVY VRDSFFAVVS PNQGYDNSFF DGYVNQQTAL PLFFRQYERA LENWFEKEIE 480 ADFDTMCTTP VLRTPSPMEK QAANLYTRKI FAKFQEELVE TFVYTANRIE GDATLSTFRV 540 AKFEDDQKAY VVTLNYPDMR ANCSCQMFEY SGILCRHVLT VFTVTNVLTL PSHFILRRWT 600 RNARNGLGSD ERAIELHGQE SLSSRYNNLC REAIRYAEEG ATAPETYNLA MTALKEAGKK 660 VATVKNNIAK VAPPSSQVSG VGYDERKTSA SASDTTPLLW PRQDEVTRRF NLNDAGAHVQ 720 SIADLNYPHI APVSLHRDDN PPDHVAVLPY LKSMTWVMEN KNSTTGNRVA VINLKLQDYS 780 KSPSAESEVK FQLSRVSLEP MLRSMAYISE QLSTPANKVA VINLKLQDTE TTSGESEVKF 840 QVSRDTLGAM LRSMAYIREQ LSNAAESEPL PKKQRK

Sequence ? help Back to Top

Protein Sequence Length: 876 aa Download sequence

MDEMVGVDGL AHPAVVDDSD VDPHEGEINT AEDSAFHDED GIIEPYEGME FESEGNAKTF  60
YDEYARRIGF SSKLGQLSRS KSDGIIISRE FVCARECSER KPAGSCDAML RIELKDQDKW  120
VVTKFVKEHS HSTVNLSKVH YLRPRRHFAG AAKTMTEAYT GSAGVPSGVM SVLMDDNRAP  180
AGKTRGGWKT SQAEANRSLN NASTMNYPIR NAGQKRTLGR EAQNMLEYFK KMQSENPGFF  240
YAIQLDEDNR MANVFWADAR SRAAYSHFGD AVTLDTMYRV NQFRVPFAPF TGVNHHGQTI  300
LFGCALLLDE SEASFVWLFK TFLTAMNNRQ PVSVTTDQDR AIHVAIAQVF PDARHCISKW  360
HVLREGQQKL AHVCLTYPNF QVELYNCINL TETIEEFESA WNCIIEKYNL GRNDWLQSLY  420
NARAQWVPVY VRDSFFAVVS PNQGYDNSFF DGYVNQQTAL PLFFRQYERA LENWFEKEIE  480
ADFDTMCTTP VLRTPSPMEK QAANLYTRKI FAKFQEELVE TFVYTANRIE GDATLSTFRV  540
AKFEDDQKAY VVTLNYPDMR ANCSCQMFEY SGILCRHVLT VFTVTNVLTL PSHFILRRWT  600
RNARNGLGSD ERAIELHGQE SLSSRYNNLC REAIRYAEEG ATAPETYNLA MTALKEAGKK  660
VATVKNNIAK VAPPSSQVSG VGYDERKTSA SASDTTPLLW PRQDEVTRRF NLNDAGAHVQ  720
SIADLNYPHI APVSLHRDDN PPDHVAVLPY LKSMTWVMEN KNSTTGNRVA VINLKLQDYS  780
KSPSAESEVK FQLSRVSLEP MLRSMAYISE QLSTPANKVA VINLKLQDTE TTSGESEVKF  840
QVSRDTLGAM LRSMAYIREQ LSNAAESEPL PKKQRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1 family protein