PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022960320.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

Protein Properties

Length: 610aa MW: 67839.9 Da PI: 6.071

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022960320.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	66.6	3.6e-21	477	574	2	96
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 +kvl++sdv+++gr+vlpkk ae+h +++ + ++ + +ed ++++W+++++y ++ks++y+l+ ++ +Fv+angL+egDf+v++ ++ +++ XP_022960320.1 477 QKVLKQSDVGNLGRIVLPKKEAETHlpELEARDGISIAMEDiGTSKVWNMRYRYwpNNKSRMYLLE-NTGDFVRANGLQEGDFIVIY--SDvKCG 568 79***********************999999****7778*****777777777777.******************..566999 PP ..EEEE CS B3 91 elvvkv 96 +++++ XP_022960320.1 569 KYMIRG 574 888765 PP

Sequence ? help Back to Top
Protein Sequence Length: 610 aa Download sequence
MDQTQIWFPQ NHQNFLSDDD DTLMFYSDFP PLSDFPCMSS SSSSSSSLTP APVKATASSP 60 STSSSSTTSW AILKSDAEEP IEEIRVNDNN NSTSVAAAMS SPPPPPAETG FNDVDCTDDM 120 MMMDTFGYMN LVEDSNEFFD PTCIFQNEEQ KDPLEDLQLE SFEEVVMEDL MMMHEEGGSK 180 IDEGKQNDVV VEEEEDMAKV FLEWLRSNKE TVSADDLRNV RIKKATIDSA ARRLGGGKEG 240 MKQLLKLVLQ WVQTNHLHKR KFKDEANFLG FQAPLPSPPV IGYAPAGGGD AYATSHGFSD 300 HYQLLDSPFA PCFNSFIDNF TAGPPPLPLQ PHGIAAGYGG GHQYHPYMGQ YFQGQGGGGG 360 GGDTSLVRLD SSATKEARKK RMARQRRFSA HHRHGSHQNQ HPIQMNTNAS DHCTMATTVQ 420 PNSTNWVYWP SPTGAGCPVD SSPVYSVDRL NQNFLLPIPT HRRQGWKSEK NLRFLLQKVL 480 KQSDVGNLGR IVLPKKEAET HLPELEARDG ISIAMEDIGT SKVWNMRYRY WPNNKSRMYL 540 LENTGDFVRA NGLQEGDFIV IYSDVKCGKY MIRGVKVRQP GSKPDSKRPG KLQRKGSTSS 600 PTAVATLKRQ

Sequence ? help Back to Top

Protein Sequence Length: 610 aa Download sequence

MDQTQIWFPQ NHQNFLSDDD DTLMFYSDFP PLSDFPCMSS SSSSSSSLTP APVKATASSP  60
STSSSSTTSW AILKSDAEEP IEEIRVNDNN NSTSVAAAMS SPPPPPAETG FNDVDCTDDM  120
MMMDTFGYMN LVEDSNEFFD PTCIFQNEEQ KDPLEDLQLE SFEEVVMEDL MMMHEEGGSK  180
IDEGKQNDVV VEEEEDMAKV FLEWLRSNKE TVSADDLRNV RIKKATIDSA ARRLGGGKEG  240
MKQLLKLVLQ WVQTNHLHKR KFKDEANFLG FQAPLPSPPV IGYAPAGGGD AYATSHGFSD  300
HYQLLDSPFA PCFNSFIDNF TAGPPPLPLQ PHGIAAGYGG GHQYHPYMGQ YFQGQGGGGG  360
GGDTSLVRLD SSATKEARKK RMARQRRFSA HHRHGSHQNQ HPIQMNTNAS DHCTMATTVQ  420
PNSTNWVYWP SPTGAGCPVD SSPVYSVDRL NQNFLLPIPT HRRQGWKSEK NLRFLLQKVL  480
KQSDVGNLGR IVLPKKEAET HLPELEARDG ISIAMEDIGT SKVWNMRYRY WPNNKSRMYL  540
LENTGDFVRA NGLQEGDFIV IYSDVKCGKY MIRGVKVRQP GSKPDSKRPG KLQRKGSTSS  600
PTAVATLKRQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24650.1	8e-93	B3 family protein