PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022960026.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family GRAS
Protein Properties Length: 651aa    MW: 71405 Da    PI: 5.1672
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022960026.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS446.22.3e-1362896501374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv+lLl+cAeav+++d  la+++L +l+  ++p gd+mqR+a++fteAL+arla  + +++k ++p +  +kns e l+++++ ++++P++kf+h
  XP_022960026.1 289 LVHLLLACAEAVAKEDYMLARRYLHHLNRVVTPIGDSMQRVASCFTEALSARLAA-TFTTAKPISPIPPFPKNSLEILKIYQIVYQACPYVKFAH 382
                     68****************************************************9.77788888888888899********************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +taNqaI ea+e eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+      ++++etg+ L+++A++l+vpfef++ + ++le+l+
  XP_022960026.1 383 FTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGSPFLRITGVGP----VIDAVQETGRCLTELAHSLNVPFEFHA-IGEQLEALK 472
                     ******************************************************....99*************************.7******** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     +++++ + gEalaVn+v +lhr++    sl +    +L ++++  P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p+es +r+kv
  XP_022960026.1 473 PNMFNRRVGEALAVNVVNRLHRVP--GKSLGN----LLAMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPESAQRAKV 561
                     ***********************9..455555....*********************************************************** PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     E+ ++++ei+n+vacegaer+erhe+l+kWr+ +e+ GFk v+ls++a++q k ll  ++ dgyr+ e++g+l+lgW+dr+L+++SaWr
  XP_022960026.1 562 EQYIFAPEIRNIVACEGAERIERHERLAKWRKLMETKGFKGVALSSNAVTQSKILLGLYSCDGYRLTEDKGCLLLGWQDRALIAASAWR 650
                     ****************************************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    
MINSLCGSIA PSNSTETSSS SKPPPPTSPN EAVSAKTAAV SSSDLEPTSL SFPAPKFEID  60
GDIEIQSPDN SVWDSLFADQ LDCDFMISSP VRSLPSPHNL GFNYSNYNFG QAMQCSPPRS  120
CSQVGASSSV HKGKGLSPLH KVFSSPSNQY MQAIEGTSSL PTIGELLDDY EEPEGFEAFQ  180
NLSKISGIGE SLQFYDISTS SLPPVFEDLA VPNQSSTMDR EFYTQMGSIT TAPLPQQDQQ  240
QQQPPLPPPP ALSPLPLPPP KQPQNQLNHS LMVPLPVGSE QEQDSGLQLV HLLLACAEAV  300
AKEDYMLARR YLHHLNRVVT PIGDSMQRVA SCFTEALSAR LAATFTTAKP ISPIPPFPKN  360
SLEILKIYQI VYQACPYVKF AHFTANQAIF EAFEAEERVH VIDLDILQGY QWPAFMQALA  420
ARPGGSPFLR ITGVGPVIDA VQETGRCLTE LAHSLNVPFE FHAIGEQLEA LKPNMFNRRV  480
GEALAVNVVN RLHRVPGKSL GNLLAMIRDQ APNIVTLVEQ EASHNGPYFL GRFLEALHYY  540
SAIFDSLDAT FPPESAQRAK VEQYIFAPEI RNIVACEGAE RIERHERLAK WRKLMETKGF  600
KGVALSSNAV TQSKILLGLY SCDGYRLTED KGCLLLGWQD RALIAASAWR C
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-102GRAS family protein