PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022959361.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

bHLH

Protein Properties

Length: 642aa MW: 72480.6 Da PI: 6.3146

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022959361.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.3	2e-06	456	489	17	55
HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 N++f L+++lP++ +K++iL +++Y+k+L+ XP_022959361.1 456 NEKFMALKSMLPSL-----NEINKVSILNDTIKYLKMLE 489 99*********8.....58*************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 642 aa Download sequence
MACEPGILRK QLAVAVKSIQ WSYAIFWSPS IRQHGVLEWC DGYYNGDIKT RKTVQAEDVH 60 VDIMGLHRSE QLRELYKSLL DGESEQRAKK PPASLSPEDL SDAEWYYLVC MSFFFNQGQG 120 LPGRALADDR TIWLCNAQYA ESSVFSRSLL AKSASIQTVV CFPYLGGVIE LGVTEQVSED 180 PSLLQHVKDF LLKFSKPICS KKSSSSAYKD DNGKEPMVAK SDNEIVEVLA MENVHGLTAA 240 KFDRKAVNGI QRKNDEFGID SLDRFSNGCE RFHQMVDPLR LEGVEGGASC FRSLQFLDDD 300 FSYGFQDSMN PSDCISEALA NNPEKVSSKG TNDLSLKELQ NSNRTKSVSL DPRTDEDLHY 360 KKTIFTILGS STQLAGSPLL HSFSSRSSFM PWKKGMAEIN TAPVQQKMLK KILFTVPLLS 420 AGCSLNRLKD RERSILKQGN DDFCTKDVVH DKLRENEKFM ALKSMLPSLN EINKVSILND 480 TIKYLKMLEA RVQELETCMD SLYYEERFRR KYLDMVEQTS DNYDYDKIEG TLKPSTNKRK 540 ACEMDETDLK LKNNIPKDGL KLDVKVTMNE QEVLVDMHCP YREYILVDVM DTLNDLQLDA 600 HSVQSSDRNG VFSLTLKSKF RGMVGASAGM VKLALLKVAN KS

Sequence ? help Back to Top

Protein Sequence Length: 642 aa Download sequence

MACEPGILRK QLAVAVKSIQ WSYAIFWSPS IRQHGVLEWC DGYYNGDIKT RKTVQAEDVH  60
VDIMGLHRSE QLRELYKSLL DGESEQRAKK PPASLSPEDL SDAEWYYLVC MSFFFNQGQG  120
LPGRALADDR TIWLCNAQYA ESSVFSRSLL AKSASIQTVV CFPYLGGVIE LGVTEQVSED  180
PSLLQHVKDF LLKFSKPICS KKSSSSAYKD DNGKEPMVAK SDNEIVEVLA MENVHGLTAA  240
KFDRKAVNGI QRKNDEFGID SLDRFSNGCE RFHQMVDPLR LEGVEGGASC FRSLQFLDDD  300
FSYGFQDSMN PSDCISEALA NNPEKVSSKG TNDLSLKELQ NSNRTKSVSL DPRTDEDLHY  360
KKTIFTILGS STQLAGSPLL HSFSSRSSFM PWKKGMAEIN TAPVQQKMLK KILFTVPLLS  420
AGCSLNRLKD RERSILKQGN DDFCTKDVVH DKLRENEKFM ALKSMLPSLN EINKVSILND  480
TIKYLKMLEA RVQELETCMD SLYYEERFRR KYLDMVEQTS DNYDYDKIEG TLKPSTNKRK  540
ACEMDETDLK LKNNIPKDGL KLDVKVTMNE QEVLVDMHCP YREYILVDVM DTLNDLQLDA  600
HSVQSSDRNG VFSLTLKSKF RGMVGASAGM VKLALLKVAN KS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41315.1	1e-146	bHLH family protein