PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022957809.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | YABBY | ||||||||
Protein Properties | Length: 237aa MW: 26238.6 Da PI: 8.6184 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 227.9 | 2.6e-70 | 27 | 194 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaesh...ldeslkeelleelkveeenlksnvekeesas 93 ++ s+eq+Cyv+Cn C+t+lavsvP +slfk+vtvrCGhCt+ll vn++ ll++ ++ l++s+ + ++ l++ + + + +++ +a+ XP_022957809.1 27 HHLPSPEQLCYVHCNICDTVLAVSVPCSSLFKTVTVRCGHCTNLLPVNMRGL--LLPSANQfhqLGHSFFSPSHNILENIPTPNSNYLINQFAAT 119 67889*****************************************777665..55555540015566555533333333333222333333333 PP YABBY 94 tsvssekl.senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ + + s+ +e+pr+p ++rPPekrqrvPsaynrfik+eiqrik+ nPdishreafsaaaknWahfP+ihfgl XP_022957809.1 120 NT---FGMpSRGVADELPRPPVINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGL 194 33...3332778899****999******************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence |
MSSSSSSPTS STTTTTQQQQ QQQQLDHHLP SPEQLCYVHC NICDTVLAVS VPCSSLFKTV 60 TVRCGHCTNL LPVNMRGLLL PSANQFHQLG HSFFSPSHNI LENIPTPNSN YLINQFAATN 120 TFGMPSRGVA DELPRPPVIN RPPEKRQRVP SAYNRFIKDE IQRIKSVNPD ISHREAFSAA 180 AKNWAHFPHI HFGLMPDQTV KKTNIRQQEG DHGSVVMKDN GFYAAAAASP NVGVSHF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 9e-80 | YABBY family protein |