PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022957478.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 371aa MW: 42583.2 Da PI: 6.8198

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022957478.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.0005	79	101	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cgk+F + L++H H XP_022957478.1 79 CSyeGCGKTFIDAGALRKHSHIH 101 77779**************7766 PP
2	zf-C2H2	16.4	2.5e-05	106	130	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ Cgk F ++s LkrH H XP_022957478.1 106 YVCHydGCGKKFLDSSKLKRHFLIH 130 9********************8877 PP
3	zf-C2H2	21.7	5.3e-07	136	160	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++Cp Cgk Fs nL++H++tH XP_022957478.1 136 FVCPheGCGKAFSLDFNLRSHMKTH 160 89**********************9 PP
4	zf-C2H2	16.6	2.2e-05	166	190	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp dCgk+F + + Lk+H +H XP_022957478.1 166 HICPfpDCGKRFAHEYKLKNHVTSH 190 679999****************995 PP
5	zf-C2H2	11.2	0.0012	229	254	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 + Cp C k + + + Lk H+++ H XP_022957478.1 229 HACPyeGCEKAYIHEYKLKLHLKReH 254 579999*****************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence
METHFNHNLF DRRPIRKNTN SSVKWIKEWV PQDVVATGGK FFLFKWVTED TLKALKEKSK 60 QSEAPEPEPE PTTEVLFLCS YEGCGKTFID AGALRKHSHI HGERQYVCHY DGCGKKFLDS 120 SKLKRHFLIH TGERDFVCPH EGCGKAFSLD FNLRSHMKTH SQENYHICPF PDCGKRFAHE 180 YKLKNHVTSH HEKNATAEVV KYTPPFEKQT KASKPSGGAS ASASSDRPHA CPYEGCEKAY 240 IHEYKLKLHL KREHPGHFVE DNGNAPHNGE NEIEASDQDG YGRKRVNVKN QKRNRPKPNL 300 KLPPSKVAQR KGATPSPAPM SAAVKKSWRV KEENYEEEEE DSEETEEDRE NVEGWGYAEN 360 EDDDEETEYE D

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence

METHFNHNLF DRRPIRKNTN SSVKWIKEWV PQDVVATGGK FFLFKWVTED TLKALKEKSK  60
QSEAPEPEPE PTTEVLFLCS YEGCGKTFID AGALRKHSHI HGERQYVCHY DGCGKKFLDS  120
SKLKRHFLIH TGERDFVCPH EGCGKAFSLD FNLRSHMKTH SQENYHICPF PDCGKRFAHE  180
YKLKNHVTSH HEKNATAEVV KYTPPFEKQT KASKPSGGAS ASASSDRPHA CPYEGCEKAY  240
IHEYKLKLHL KREHPGHFVE DNGNAPHNGE NEIEASDQDG YGRKRVNVKN QKRNRPKPNL  300
KLPPSKVAQR KGATPSPAPM SAAVKKSWRV KEENYEEEEE DSEETEEDRE NVEGWGYAEN  360
EDDDEETEYE D

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.1	1e-141	C2H2 family protein