PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022953960.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

FAR1

Protein Properties

Length: 667aa MW: 77352.2 Da PI: 8.5951

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022953960.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.5	3.9e-22	58	141	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAkevGF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+ trtgC a+++++++++++w+v +++leHnH l XP_022953960.1 58 NYYNCYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----RLRKDTRTGCPAMIRMRLMDSQRWRVLEVSLEHNHLL 141 69***************************************9988.....99*******************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 667 aa Download sequence
MEEPSLTSDQ SPQVEHSGIH KDGNEDARIS ELDGHHGRKE FVAPAVGMEF ESYEDAYNYY 60 NCYAKEVGFR VRVKNSWFKR NSREKYGAVL CCSSQGFKRI KDVNRLRKDT RTGCPAMIRM 120 RLMDSQRWRV LEVSLEHNHL LGSKIYKSMK KMNGGAKRKI QLSSDAEDRT INLYRALVID 180 AGGSVATDTS AKKVRIIPDH RNHLNLKKGD SQAIYNYLCR MQLTNPNFYY SMDLNDDGRL 240 RNMIWVDARS RAACAFFGDV ICFDNSYLSN KYEIPLVAFV GINHHGQSVL LGCGLLAGET 300 TESYTWLFRA WLSCMSGRSP QTIITDRCRH LQAAITEVLP KSQHRFGLSY IMKKVPEKLG 360 GLRNYDAIKK AFNKAVYETL KVIEFDSAWG FMIQRFGIGD HEWLRSLFED RGQWAPVYLK 420 DTFFAGMSAM GRGEKLNPFF DKYVHKQTPL KEFLDKYELA LQKKHKEEAS ADIESRNSSP 480 TLKTRCSFEL QLSKVFTREI FTKFQFEVEE MYSCFSTTQF QVDGPLVIFL VKERIVSEGN 540 RREIREYEVL YNRTAGEVRC ICSCFNFYGY LCRHALCVLN FNGVEEIPSR YVLSRWKKDY 600 KRLYVPDHET DIVDGSERVR WFNQLYKSAL QVVEEGVISL DHYKAALQAF EESLSRVHET 660 VREEKHE

Sequence ? help Back to Top

Protein Sequence Length: 667 aa Download sequence

MEEPSLTSDQ SPQVEHSGIH KDGNEDARIS ELDGHHGRKE FVAPAVGMEF ESYEDAYNYY  60
NCYAKEVGFR VRVKNSWFKR NSREKYGAVL CCSSQGFKRI KDVNRLRKDT RTGCPAMIRM  120
RLMDSQRWRV LEVSLEHNHL LGSKIYKSMK KMNGGAKRKI QLSSDAEDRT INLYRALVID  180
AGGSVATDTS AKKVRIIPDH RNHLNLKKGD SQAIYNYLCR MQLTNPNFYY SMDLNDDGRL  240
RNMIWVDARS RAACAFFGDV ICFDNSYLSN KYEIPLVAFV GINHHGQSVL LGCGLLAGET  300
TESYTWLFRA WLSCMSGRSP QTIITDRCRH LQAAITEVLP KSQHRFGLSY IMKKVPEKLG  360
GLRNYDAIKK AFNKAVYETL KVIEFDSAWG FMIQRFGIGD HEWLRSLFED RGQWAPVYLK  420
DTFFAGMSAM GRGEKLNPFF DKYVHKQTPL KEFLDKYELA LQKKHKEEAS ADIESRNSSP  480
TLKTRCSFEL QLSKVFTREI FTKFQFEVEE MYSCFSTTQF QVDGPLVIFL VKERIVSEGN  540
RREIREYEVL YNRTAGEVRC ICSCFNFYGY LCRHALCVLN FNGVEEIPSR YVLSRWKKDY  600
KRLYVPDHET DIVDGSERVR WFNQLYKSAL QVVEEGVISL DHYKAALQAF EESLSRVHET  660
VREEKHE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1 family protein