PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022953877.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

AP2

Protein Properties

Length: 364aa MW: 41115.4 Da PI: 7.3888

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022953877.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	50.5	5e-16	49	108	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++ g k+ ++++lg ++ +e Aa a++ a++k++g XP_022953877.1 49 SVYRGVTRHRWTGRYEAHLWDkNCWnEGqnKKgRQVYLGAYDDEEAAAHAYDLAALKYWG 108 78*****************999963367556***********************98 PP
2	AP2	51.2	3.1e-16	151	202	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g XP_022953877.1 151 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 202 89**99******99966...3.6***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence
MAKISHPPHK NSISTTANSQ SSTVHHSQKK VLKRTRKSTP RDAPAQRSSV YRGVTRHRWT 60 GRYEAHLWDK NCWNEGQNKK GRQVYLGAYD DEEAAAHAYD LAALKYWGTE TVLNFPLLTY 120 QDELKEMEGQ SREEYIGYLR RKSSGFSRGV SKYRGVARHH HNGRWEARIG RVFGNKYLYL 180 GTYATQEEAA TAYDMAAIEY RGLNAVTNFD LSRYIKYLRP EEQDIPNNNN RPPSPNAGKT 240 TSELDPKSLL EFTFPSQCSS SDQPISTPPL GPDGGDSSSS SSSNTLELLL HSSKFKDIIE 300 RKPTADPPQT PPESDRPRRC IPDDIQTYFD CTQDSDDIAE GDDGIFGYLN SFLPSSIFHY 360 ALDA

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence

MAKISHPPHK NSISTTANSQ SSTVHHSQKK VLKRTRKSTP RDAPAQRSSV YRGVTRHRWT  60
GRYEAHLWDK NCWNEGQNKK GRQVYLGAYD DEEAAAHAYD LAALKYWGTE TVLNFPLLTY  120
QDELKEMEGQ SREEYIGYLR RKSSGFSRGV SKYRGVARHH HNGRWEARIG RVFGNKYLYL  180
GTYATQEEAA TAYDMAAIEY RGLNAVTNFD LSRYIKYLRP EEQDIPNNNN RPPSPNAGKT  240
TSELDPKSLL EFTFPSQCSS SDQPISTPPL GPDGGDSSSS SSSNTLELLL HSSKFKDIIE  300
RKPTADPPQT PPESDRPRRC IPDDIQTYFD CTQDSDDIAE GDDGIFGYLN SFLPSSIFHY  360
ALDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79700.2	2e-98	AP2 family protein