PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022953409.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family GRAS
Protein Properties Length: 572aa    MW: 65329.7 Da    PI: 4.965
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022953409.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS273.47.2e-842095702374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs..Pilkfs 94 
                      ++L+++Ae vs ++ e+a++lL+r +  asp+g+++qRl++yf++AL++r++r      ++   +et ++  ++e+++l+++  +   P+ ++ 
  XP_022953409.1 209 AHVLFAAAEKVSYQQYERASRLLQRCEWAASPSGNTVQRLVFYFARALRKRINR------ETG--RETIKEPKVDEVMSLEALRGCMklPFQQVM 295
                     799***************************************************......222..222222255666666666655333****** PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                     hlta qaI e v+  ++vH iD++i  G++W a++++L + +++ p   l+iT+v+s   ++ + +e++g+ L+++Ae+l++pf+f++++++++ 
  XP_022953409.1 296 HLTAVQAIFEHVKLITKVHLIDLEIRSGVHWSAFMKSLEDLKDELPinLLKITAVVS---DKGHLIEQVGKWLENVAESLNIPFSFKAILVSDMM 387
                     ***************************************8876666569********...578899***************************** PP

            GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                     +l+ e+++++++E++a+ + l l ++  +++sle+    +++++++l+P ++vv+e ea++n +sF++rf+e+l + ++ fd+l++ + ++++ r
  XP_022953409.1 388 ELKEEHFKTEEHEMVAIYSPLVLRTMITRPASLEN----LMRVIRKLNPSIMVVSEIEANYNLSSFVNRFIESLFFTASYFDCLKTCIEEDEDSR 478
                     ***********************************....******************************************************** PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +k+E    g++i+nvva eg++r+ r  + e Wre ++++ +++++ls++  +qak + + ++ ++  ++e+++++l+ gWk+ p++svSaWr
  XP_022953409.1 479 RKIEGL-CGERIENVVASEGSDRVVRSVKIEVWREFFGRFRMEEMELSDSCLSQAKFVAKGFAyGKFCSLEKNQKCLIVGWKETPIISVSAWR 570
                     ****98.8*******************************************************88889************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    
MADDFFPFTP FDFNGSLAGT FFPSNGIHQN QETELRGKED DCPFGELGDF NFVSPDQSGF  60
YQQDILKIGN ETEYPQPNSD CLILNEILFG IGNDFTLSEL IQEKSKISDN LNADSISKQV  120
LNPCLESLQL LNSYGAKVKR MKGTDLEKRG GEASEENKSL STEEILRVAG ARYVHFFPEG  180
HDEFYMPMHP CDFALTGLSV DERNDVELAH VLFAAAEKVS YQQYERASRL LQRCEWAASP  240
SGNTVQRLVF YFARALRKRI NRETGRETIK EPKVDEVMSL EALRGCMKLP FQQVMHLTAV  300
QAIFEHVKLI TKVHLIDLEI RSGVHWSAFM KSLEDLKDEL PINLLKITAV VSDKGHLIEQ  360
VGKWLENVAE SLNIPFSFKA ILVSDMMELK EEHFKTEEHE MVAIYSPLVL RTMITRPASL  420
ENLMRVIRKL NPSIMVVSEI EANYNLSSFV NRFIESLFFT ASYFDCLKTC IEEDEDSRRK  480
IEGLCGERIE NVVASEGSDR VVRSVKIEVW REFFGRFRME EMELSDSCLS QAKFVAKGFA  540
YGKFCSLEKN QKCLIVGWKE TPIISVSAWR FL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.16e-55GRAS family protein